Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00614 ATGGAAGGCCATAGTGAAATGGGTCTAATTGGAGAAAGTTTTGATACTAGTAATTTGCTGGGGAGGATGAGGGATGATGAGTATGAAAGCCGCTCTGGAAGtgataattttgatggtggatctggtgatgatcaagatggtggtgatgatCAGCCACAGAAAAAGAAGAAGAAATACCATAGACACACTCCTCAACAAATTCAGGAGCTTGAAGCGTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGAACAGATCTTAGCAAGAGGCTTGGCTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAGAACCGACGAACCCAAATGAAGACGCAAATGGAACGTCATGAGAACATGATTCTTAAGCAGGAGAATGACAAGCTCCGAGCTGAGAACAGTGTCATGAAGGAAGCTTTGGCAAATCCGATATGTAACAGCTGTGGTGGTCCAGCCATTCCTGGTCAAATTTCACTGGAGGAACACCAGACTAGAATTGAAAATGCTCGGCTAAAGGATGAATTGAACCGAATATGCGCATTAGCAAACAAGTTCCTGGGCAGGCCCCTCTCATCAATGGCCAGCCCCATGCCTCTGCCGGCCTCAAATTCTTGTCTAGAGCTTGCTATAGGAAGAAATGGAATTGCTGGTCCAAGCAATTTTGGGATGTCGTTGCCAATGGGACTCGATGTGGGAGATGGGGTTTTGGGCTCCTCACCTATGATGGCTAACATGAGTTCTAGATCACCAATGGGAATGATGGGAAATGATGTCCAGATGGAGAGAACTATGCTTTTAGATCTTGCATTAAGTGCTATGGATGAATTGGTTAAGATGACTCAGGCTGATAGCCCTCTTTGGATTAAGAGTTCTGATGGCAGGAATGAAGTGCTGAACCATGAGGAGTATGCAAGAATGTGTTCTCCTTATATTGGACCAAAACCTGCTGGTTATGTAACTGAAGCTACTAGAGGAACTGGAGTAGTATTAGCCAACGGTTTGGCCCTTGTGGAAACATTGATGGACGTGGATCGATGGTTGGAGATGTTTGCATCTATTGTTGCTAGTGCTGCCACTCTTGATGTAATATCTAGTGGCACTGGTGGTACCAGAAGTGGGGCTTTGCAAGTGATGCTTGCCGAGATACAATTGCTTTCTCCACTCGTCCCTGCTCGTCAATTGAGTTTCCTCAGGTTTTGTAAGCAGCATGCAGAAGGTGTATGGGCTGTGGTTGATGTTTCACTGGACATTGCTCGTAATGCTGCCAATTTGCACCCACTAGTGAGCTGCAGGAGGCTTCCTTCTGGCTGTGTTATTCAGGATATGCCCAATGGTTTCTCCAAGATTACTTGGGTTGAACATTCCCAATATGATGAGAGTGTGATACACCAACTTTGTCGGCCGTTGGTTAGTTCTGGCATTGGCTTTGGTGCTCACAGATGGATTGCCACCCTCCTAAGGCAGTGTGAATGCTTGGCAATCCTCATGTCCACTCCTGGCACATCTGACGACCCCACAGTCATGAACCAAGCCGGTAGGAGGAGCATGCTGAAGCTTGCGCAGCGCATGGCCGAGTACTTCTGCTCAGGGATCTGTGCTTCATCTGCACGCAAGTGGGACATCCTTCCTATTGGTAATCTGGGCGATGACATGAGGATCATGGCCAGGAAAAATGGGGACGACCCTAATGAGGCTCCTGGCATTGTGCTGAGTGCATCAACTTCTGTTTGGATGCCGGTGTCACGCCAAAAGGTGTTTGACTTTCTGCGTAGTGGACAGTTTAGAGGTGAGTGGGACATGCTGTCCAACGGTGGTCCAATGCAGGAGATGATCCGGATTCCCAAGGGACAGGAAGATGGAAATTGTGTTTCCATCCTTACTGCTAATAGCACAGACAGCAATGTGCAATATCTGCAAGAGTCATGGACTGATGCCTCCGGCTCGATGGTGGTGTATTCGCCGATCAACATGCAATCCTTGAACGTGGTGATGAGCTGTGGAGATTCGTCCTTTGTTGCTCTCCGTCCGTCAGGCTTTGCTATTCTGCCAGATGGCCATCCGGTCAACAGCGATGGCAGTGATGGTGGTGGCAGTTGCCTTCTTACAGTTGGGCTACAAATGTTGCAGAATGGCAACCAAACATCCAAGTTCACTGTGGAGTCAGTTGAAACTGTTCATAACCTCATCTCATGCACCATTCAGAAGATCAAAGATGCACTAGGAGTTGCATGA 2232 0.4655 MEGHSEMGLIGESFDTSNLLGRMRDDEYESRSGSDNFDGGSGDDQDGGDDQPQKKKKKYHRHTPQQIQELEAFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMKTQMERHENMILKQENDKLRAENSVMKEALANPICNSCGGPAIPGQISLEEHQTRIENARLKDELNRICALANKFLGRPLSSMASPMPLPASNSCLELAIGRNGIAGPSNFGMSLPMGLDVGDGVLGSSPMMANMSSRSPMGMMGNDVQMERTMLLDLALSAMDELVKMTQADSPLWIKSSDGRNEVLNHEEYARMCSPYIGPKPAGYVTEATRGTGVVLANGLALVETLMDVDRWLEMFASIVASAATLDVISSGTGGTRSGALQVMLAEIQLLSPLVPARQLSFLRFCKQHAEGVWAVVDVSLDIARNAANLHPLVSCRRLPSGCVIQDMPNGFSKITWVEHSQYDESVIHQLCRPLVSSGIGFGAHRWIATLLRQCECLAILMSTPGTSDDPTVMNQAGRRSMLKLAQRMAEYFCSGICASSARKWDILPIGNLGDDMRIMARKNGDDPNEAPGIVLSASTSVWMPVSRQKVFDFLRSGQFRGEWDMLSNGGPMQEMIRIPKGQEDGNCVSILTANSTDSNVQYLQESWTDASGSMVVYSPINMQSLNVVMSCGDSSFVALRPSGFAILPDGHPVNSDGSDGGGSCLLTVGLQMLQNGNQTSKFTVESVETVHNLISCTIQKIKDALGVA 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00614 743 Gene3D - 267 476 IPR023393 -
Cca08g00614 743 CDD homeodomain 60 114 IPR001356 GO:0003677
Cca08g00614 743 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 5 741 - -
Cca08g00614 743 SUPERFAMILY Bet v1-like 259 491 - -
Cca08g00614 743 Coils Coil 107 142 - -
Cca08g00614 743 SMART START_1 267 491 IPR002913 GO:0008289
Cca08g00614 743 Gene3D - 43 129 - -
Cca08g00614 743 CDD START_ArGLABRA2_like 264 490 - -
Cca08g00614 743 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Cca08g00614 743 MobiDBLite consensus disorder prediction 1 63 - -
Cca08g00614 743 MobiDBLite consensus disorder prediction 19 33 - -
Cca08g00614 743 SUPERFAMILY Homeodomain-like 36 113 IPR009057 -
Cca08g00614 743 Pfam START domain 268 491 IPR002913 GO:0008289
Cca08g00614 743 SUPERFAMILY Bet v1-like 511 712 - -
Cca08g00614 743 Pfam Homeodomain 56 111 IPR001356 GO:0003677
Cca08g00614 743 SMART HOX_1 55 117 IPR001356 GO:0003677
Cca08g00614 743 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Cca08g00614 743 ProSiteProfiles START domain profile. 258 494 IPR002913 GO:0008289
Cca08g00614 743 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 741 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00614 Cca-Chr8 10882654 10887480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00614 1 740 Homeobox Transcription Factor Family AT3G61150 54.462 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca08g00614 START 9.4e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00614 K09338 - gmx:100820113 1197.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02283 02 43369206 43374992 Cca08g00614 08 10882654 10887480 ECH
Cca06g00996 06 23728252 23734812 Cca08g00614 08 10882654 10887480 ECH
Cca08g00614 08 10882654 10887480 Cca08g00614 08 10882654 10887480 ECH