Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00601 ATGCCTCCCATGACACCTTCCCGGGTGGCAGGTGGGTTAACCCAATCACCATCAAATTCTGGAATTTTCTTTCAAGGAGATGGGCAGTCGACGATTGTTGTTAATTCTCACTTGAGCTCATCTTTTGTTAATTCGTCTAGCTTAGTTCCGGGAGCTGGTCGCTCAAACCTGGGTCCAGTCTCTGGGGATATGAATAATGCAGCTTTGAACAGTGTGGCAAACTCAGCACCAAGTGTCGGAGCCAGTTCTTTAGTCACAGATGCAAATTCTGCTCTCTCTGGTGGTCCCCATTTGCAGAGAAGTGCCAGTGTTAACACAGATTCATACTTACGATTGCCTGCATCACCTATGTCATTTACTTCAAATAATATCTCTGGGTCATCAGTGATTGATGGTTCCTCTGTAGTACAACAGAGCTCTCATCAAGAACAAAATGCTCAACAATTGCAGCCTAATCAGCAGCAGCCGCATGGTGCTTCAAGTGCTACATCTTTGCCTGCATCTCAAACTGGTCTTTCTCCCCTTCAAATGAGTGCACAAGTCCCAGGATCTTTCATTCAAGATCCAAATAATATGTCTCATTTGTCAAAGAAACCTAGACTGGATATCAAACAGGAAGATATAATGCAGCAACAGGTTCTTCAGCAGATTCTTCAGAGACAAGATTCCATGCAATTACAGGGTCGTAATCCACAGTTACAGGCTTTGCTTCAACAGCAGCAGAGACTGAGACAACAGCAAATGTTTCAGTCGATGCCACAATTACAACGagcgcagttgcaacagcagcagcaacaacaacagcaacaaATGCAATTGAGGCAGCAATTTCAGCAACAAATGATGCAGCCCTCTTCTGCTGTCAAGCGTGCATATGACAGTAGTGTTAGTGGGGTTTGTGCACGTCGATTGATGCAGTATCTCTATCATCAAAGGCAACGGCCAAATGATAATAGTATTGCCTATTGGAGAAAATTTGTTGCGGAATATTACTCTCCTCGTGCAAAGAAACGGTGGTGCTTGTCATTATATAGCAACGTTGGGCATCATGCACTTGGTGTTTTCCCCCAAGCAGCTATGGATGCATGGCATTGTGACTTGTGTGGTTCTAAATCTGGAAAGGGATTTGAGGCAACTTATGAAGTATTACCTAGACTTAATGAAATCAAATTTGGCAGTGGAGTGATTGATGAACTTTTGTTTCTGGACTCATCACGTGAACAAAGATTTCCGTCTGGTGCAATGATGATAGAATTTGCAAAAGCAGTTCAAGAGAGTGTATATGAGCAGCTTCGTGTTGTTCGTGAAGGTCAACTTCGAATCATATTCACTCAAGACTTGAAGATACTGTCTTGGGAGTTCTGTGCAAGGCGCCATGAAGAACTTCTTCCTCGAAGGTTGGTTGCACCTCAGGTCAACCAATTAGTTCAGTTGGCTCAAAAATGCCAGAGTACAATTGCTGAAAGTGGGGCAGATGGGGTTTCTCAGCAAGACTTACAAACTAACAGCAACATGGTATTGACAACTGGACGTCAGCTTGCAAAGATTTTAGAGTTGCAATCGCTAAATGACCTGGGCTTTTCTAAAAGATATGTGAGATGTTTGCAGATTTCGGAGGTCGTCAATAGCATGAAAGACCTAATAGATATCTGTGCAGATCACAAAATTGGGGCAATTGAGAGCTTGAAAAACTATCCTCGGCTTGCAACAACCTCAAAGATCCAGATGCAAAAGATGCAAGAAATGGAACAGATAGCAAGTGTTCAAGGTCTGCCAACTGATCGAAACACACTTAATAAGCTAATGGCACTGAATCCTGGATCGAACAATCATATGAACAACACTCATAATATGGTTAATCGTGGTGGTTTGAGTGGGTCAGCCCAAGCTGCTTTAGCACTGAACAGCTACCAGAATCTTCTCATGAGGCAAAATTCTATGAATTCCAGCCCTGGCTCACTTCAGCGAGAAGGGCCCTCTTTCAATAATTCAAGCCCGAGTCCCTCTTCTGCTCTTCAAGGATCTGGTCCCGCTCTAAATCCAGGCTCAATGCAGAATTCTCCTGGTAGTGGTTTTCCAAGTCCCCATCTAACCCCACAGCAGCAGCAGCAACAACAACTCCTTCAACAGCGCACATTAAGTGCAAATAGTTTACTGCAACAAAATACTTCGCAGGGGTCCCAAGGAAATCAAGCTCTACAGCAGCAGCAGGTGATCCAGCACCTGCTGCAGGAGATGTCAAATAACAATGGGGGAATGCAACCACAATCTCTTGGTGGACCCAATGCAAATGGGAATATGGCGAAGAATGCATTGGGTTTTGGGGGCCATACTCCAACTGTAAGCGGAGGGGGTTCTGCCAACGTTTTAGGAAACAATGGACCCATTTCAAGGAATAATAGCTTCAAAACTACTTCAAATGGAGATTCTTCTGCAGCCGGTGGCAACAATGGATTCAACCCGAGAACATCCGAGATGCCACAAAATCTGCATTTGCAAGATATGATACCGGAGATTGGCCATGAGTTTGCAGATAATACCTACTTTCACAGTGATCTTGATGATAACATGGGCTTCGGCTGGAAGGCATGA 2592 0.4344 MPPMTPSRVAGGLTQSPSNSGIFFQGDGQSTIVVNSHLSSSFVNSSSLVPGAGRSNLGPVSGDMNNAALNSVANSAPSVGASSLVTDANSALSGGPHLQRSASVNTDSYLRLPASPMSFTSNNISGSSVIDGSSVVQQSSHQEQNAQQLQPNQQQPHGASSATSLPASQTGLSPLQMSAQVPGSFIQDPNNMSHLSKKPRLDIKQEDIMQQQVLQQILQRQDSMQLQGRNPQLQALLQQQQRLRQQQMFQSMPQLQRAQLQQQQQQQQQQMQLRQQFQQQMMQPSSAVKRAYDSSVSGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSPRAKKRWCLSLYSNVGHHALGVFPQAAMDAWHCDLCGSKSGKGFEATYEVLPRLNEIKFGSGVIDELLFLDSSREQRFPSGAMMIEFAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVNQLVQLAQKCQSTIAESGADGVSQQDLQTNSNMVLTTGRQLAKILELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDICADHKIGAIESLKNYPRLATTSKIQMQKMQEMEQIASVQGLPTDRNTLNKLMALNPGSNNHMNNTHNMVNRGGLSGSAQAALALNSYQNLLMRQNSMNSSPGSLQREGPSFNNSSPSPSSALQGSGPALNPGSMQNSPGSGFPSPHLTPQQQQQQQLLQQRTLSANSLLQQNTSQGSQGNQALQQQQVIQHLLQEMSNNNGGMQPQSLGGPNANGNMAKNALGFGGHTPTVSGGGSANVLGNNGPISRNNSFKTTSNGDSSAAGGNNGFNPRTSEMPQNLHLQDMIPEIGHEFADNTYFHSDLDDNMGFGWKA 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00601 863 Coils Coil 260 280 - -
Cca08g00601 863 PANTHER LIM DOMAIN-BINDING PROTEIN 8 150 IPR029005 -
Cca08g00601 863 PANTHER LIM DOMAIN-BINDING PROTEIN 166 862 IPR029005 -
Cca08g00601 863 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 166 862 - -
Cca08g00601 863 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 8 150 - -
Cca08g00601 863 MobiDBLite consensus disorder prediction 781 828 - -
Cca08g00601 863 MobiDBLite consensus disorder prediction 772 828 - -
Cca08g00601 863 MobiDBLite consensus disorder prediction 644 709 - -
Cca08g00601 863 Pfam LIM-domain binding protein 303 563 IPR029005 -
Cca08g00601 863 MobiDBLite consensus disorder prediction 130 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00601 Cca-Chr8 10562392 10570627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00601 298 567 C2H2 Transcription Factor Family AT1G43850 59.259 2.92e-106 346
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00601 08 10562392 10570627 Cca08g00601 08 10562392 10570627 ECH