Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00596 ATGGCTTCTGAGAAAGTTGATATCAGTGTTTTGGTTGTGGATGATGATGATACTTCTTTGGCCATCATTACTAACATACTCAACTCATTCGATTATAAAGTTCTCATTGCCAGAGGCGCTCTTAACGCTTTGGATATTCTTCGAGAGTTTCAAGGCTTTCTTGATCTCGTCATTACAGAACTTCATATATCAGGAATGGACGGGGTTGAATTTCAAAAGCGTATTGAAAATGAATTCCAGTTACCAGTAATAATGATGTCAGCAGATAGGAGAAAGAGTGCAGTGGCCAAGAGTTTAGCAAATGGTGCAGCACATTTTATTTTGAAACCCTTTTGCCAAGATGACTTCAAGGACATTTGGCAGCATGCTGTGGCTGCAAGGAAAAGGAAAATAAGTATTGAAAATAATGAAGGGGCCTCACTGCCAGGTGGTGGCGTTTTTATTCAGGATGCTAACTATGCAATACCATCCACTGTGAATAAGAGGAAAAGGAAGTACAAGAGTAGCCAAAAGAATAATAAGGAAGGCCAAAGTGAAGGAAAGCATCGGCTTGTGAAGAAACCAAAGATTGTTTGGACAGCGTACCTTCACAACATCTTTCTGCTTGCCATAAAACGTATTGGATTGGAGAGCTTGAACATGAGGGTTCAACACCAGCATGGTGATTCTTTGAATCAAGCCAGACTTGGAATGCAATCAAGCTTTGCTACCAATAATGCTGGGGCCAATTACAACAATATTCAACAAAAGATGTTGGGAAGCTATGCCAACTCATCATACTATTCAAAAAGCTCTTGCAACAATGTTGGTGCTGTCTTTCAATCAAATGGAACAATGGGACACGGCTTGATCACTGCAAATGGCCTTAGAGGAGGTGTGAAATATGGTAACCAGCAATTGATGAATCAAAACTATGGTACTTCATTGGAAAATTATCACAAGTTTAGCTATGATCAAGTAAACTGGAACATGGGATCTTTGAACTACTCTAATAATAATAATCTGACTTGGAATAGTACTACTTATAATACCAACGGTAACATTCAACAGAATGGTGGATCACAAGTGGTTGGAAATGGAATGAAAGGAGAGTATAACAATGCTGTTGGTACTACGGATTCCATTGCAAACAACTCTAATAATAATCTGACTTGGAATAGTACTACTTACGATACCAGCAGCAGCATTCAACAGAATGGTGGATCACAAGTGGTTGGAAATGGAACAAAAGGAGGGTATAACAATACTATTGGTACGCTGAATTCTATTGCAAACAACAATAGCTTTGGGTTGATCAAAGGGACAACTCAAAATACAAATAGGAATGTTGTGGCACCTTTAGGGCAAGGAAATTCTGGTTTGGCTCAAGGAGGGTTTGCTTCTGCTTCTGCTTCTATTGCTATGGATTATGTCAAGTCAAGTGATCACCTTCCACCAGCATTTATCACTAATAATGGAACAGGAGCAGAAAATGTTTCTGTGAACCAACAAAGGTCACAGCAACAAAATGTCAATGTTGCAGGAAATGTCACTTCAATCGGTGAGGGTGATTTCAACCACCTAGCAGATGAAGTCGACCTTTCTGATCTTTTCTTGATGATAGATGAAATGGATATTCTTATTGAGACTGGAGAGAATCCTAATGCAAGTGAACTTCCAAAGTCTGACTTTTCTAACTCAACTCATGCTGTGCAATCCCATGAACAGTCCAACAGTGGTAGTGATATGATTATCGACCAAACTGAAAGCACATTAAATGTGTCAAACGAGTCCCCAACAAGCTCTGACAAGAATTCTAATCAGCTGGGAGGCTATAGCGGATTTCTGGACATAGAATCCTTGGATAGGTTCATGGTGGATGATGTTTCCTCAGCACGTGACTCAGCTACTTATCAGGATTGGGATATGGATTTCATTGAAACCTTGTTTGCTGCTGAGACAAACTAG 1947 0.397 MASEKVDISVLVVDDDDTSLAIITNILNSFDYKVLIARGALNALDILREFQGFLDLVITELHISGMDGVEFQKRIENEFQLPVIMMSADRRKSAVAKSLANGAAHFILKPFCQDDFKDIWQHAVAARKRKISIENNEGASLPGGGVFIQDANYAIPSTVNKRKRKYKSSQKNNKEGQSEGKHRLVKKPKIVWTAYLHNIFLLAIKRIGLESLNMRVQHQHGDSLNQARLGMQSSFATNNAGANYNNIQQKMLGSYANSSYYSKSSCNNVGAVFQSNGTMGHGLITANGLRGGVKYGNQQLMNQNYGTSLENYHKFSYDQVNWNMGSLNYSNNNNLTWNSTTYNTNGNIQQNGGSQVVGNGMKGEYNNAVGTTDSIANNSNNNLTWNSTTYDTSSSIQQNGGSQVVGNGTKGGYNNTIGTLNSIANNNSFGLIKGTTQNTNRNVVAPLGQGNSGLAQGGFASASASIAMDYVKSSDHLPPAFITNNGTGAENVSVNQQRSQQQNVNVAGNVTSIGEGDFNHLADEVDLSDLFLMIDEMDILIETGENPNASELPKSDFSNSTHAVQSHEQSNSGSDMIIDQTESTLNVSNESPTSSDKNSNQLGGYSGFLDIESLDRFMVDDVSSARDSATYQDWDMDFIETLFAAETN 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00596 648 Pfam Response regulator receiver domain 10 117 IPR001789 GO:0000160
Cca08g00596 648 PANTHER RESPONSE REGULATOR 23-RELATED 5 510 - -
Cca08g00596 648 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 510 IPR045279 GO:0009736
Cca08g00596 648 SUPERFAMILY CheY-like 8 128 IPR011006 -
Cca08g00596 648 MobiDBLite consensus disorder prediction 159 182 - -
Cca08g00596 648 SMART REC_2 8 120 IPR001789 GO:0000160
Cca08g00596 648 CDD REC_typeB_ARR-like 10 124 - -
Cca08g00596 648 MobiDBLite consensus disorder prediction 548 575 - -
Cca08g00596 648 MobiDBLite consensus disorder prediction 546 575 - -
Cca08g00596 648 Gene3D - 9 168 - -
Cca08g00596 648 ProSiteProfiles Response regulatory domain profile. 9 124 IPR001789 GO:0000160
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00596 8 210 Response Regulator Gene Family AT4G16110 33.945 1.01e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca08g00596 Response_reg 8.7e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00596 - - ccaj:109804032 782.711