Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00595 ATGTTTACCTTGAGTCACTCTTCTGACGGCTACCATGCTTCCTCCGGGGGCTCTCGCGGCGGCGTCGCATTTCCCGGCGAGGACGTGCGGTTGGCGGTGAGGCACCCGAAGAAGCGGGCGGGCCGGAAGAAGTTCCAGGAGACGCGCCACCCGGTGTACCGGGGAGTCAGGAGGAGAAACTCTGATAAGTGGGTTTGTGAAGTGAGGGAGCCCAACAAGAAGACAAGGATTTGGTTGGGGACTTTCCCCACGCCGGAGATGGCCGCCCGGGCTCACGACGTGGCGGCGATGGCCCTCAGGGGCCGGCCAGACCAGACTTTAAAAAGGATAGACCAGACTTTAAAAAGTATCGATATGAGGGAAGAGCATGTAGAAGTAACATCAATGACGACGATAACAACGACAATGAGAGACCAACAAGGCATGTTTTATATGGATGAAGAGGAAGGGCAAGAGTTGGATATGCCTGAGTTGCTTAGAAATATGGTGCTAATGTCTCCAACGCACTGTTTGGGGTATGAGTATGAAGATGCTGACTTGGAGGCTCAAGATGCTGAGGTGTCACTATGGAGTTTCTCAATTTAG 585 0.5333 MFTLSHSSDGYHASSGGSRGGVAFPGEDVRLAVRHPKKRAGRKKFQETRHPVYRGVRRRNSDKWVCEVREPNKKTRIWLGTFPTPEMAARAHDVAAMALRGRPDQTLKRIDQTLKSIDMREEHVEVTSMTTITTTMRDQQGMFYMDEEEGQELDMPELLRNMVLMSPTHCLGYEYEDADLEAQDAEVSLWSFSI 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00595 194 MobiDBLite consensus disorder prediction 1 24 - -
Cca08g00595 194 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Cca08g00595 194 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Cca08g00595 194 SMART rav1_2 52 114 IPR001471 GO:0003700|GO:0006355
Cca08g00595 194 Gene3D AP2/ERF domain 52 107 IPR036955 GO:0003700|GO:0006355
Cca08g00595 194 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 109 194 IPR045277 GO:0003700
Cca08g00595 194 ProSiteProfiles AP2/ERF domain profile. 52 110 IPR001471 GO:0003700|GO:0006355
Cca08g00595 194 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 7 102 - -
Cca08g00595 194 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 109 194 - -
Cca08g00595 194 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Cca08g00595 194 CDD AP2 53 106 IPR001471 GO:0003700|GO:0006355
Cca08g00595 194 SUPERFAMILY DNA-binding domain 52 103 IPR016177 GO:0003677
Cca08g00595 194 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 102 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00595 Cca-Chr8 10102758 10103731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00595 18 192 AP2-EREBP Transcription Factor Family AT4G25470 45.366 8.45e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca08g00595 AP2 4.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00595 - K09286 gmx:547622 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00595 08 10102758 10103731 Cca02g02295 02 43592153 43593381 PCT