Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00593 ggcttcaagagctgaatttgttaaaaaaattacatgagaggattaaattgcaaatacaacaacaaaatgagagatatgttaaagctaataataaaggcaaaaggaatatgatcttcgaggaaggagactgggtttggcttcatttgcgaaaagaaaggtttccccaaaagagaaagtctaagcttagtccccgaggagatggaccttttcaactcctgcagcgtatcaataataacacttacaggcttgatcttccctctgattatggagttagccctacttttaatgttagtgatctaaaaccttttgtaggagctagtgacgatgagggtgagtctttagatttaaggacaaatccttctcaagagggaggggatggtggaagagcatggaccaaggatccaaccactagagctatggctaggagattacatgaagatttgactactttagagtttggtgggcctagggtactttcacatgggctttatagtgaccaccattattattgtttccaatatgtaGTTCAAGGATTGGTTAATACTTTTGGAGATCTTCGTGGAACTTTGGCTGCTGTTGAGAGGATCAACTCTGTTTTGTCTGGAGCTCCAGTTGATGATGCCCTTGCTTATGGGTTAGAAAGAGAACTGAAACAAAAAACAATGGATGATGAAAGCTATAAATTGGTCTTAGCTAATATTTCTACTGAGAATAACCAAAAAAATTATTTACATTACATGTCAGCTCTTAAAACATCAAGCAATTTGTGTAACTTAGCTTGGTCTGGAGATATTTGTCTTGAAGATGTGTATTTCTCTTATCCTTTAAGGCCAGATGTGGAAATCTTAAATGGCCTAAATTTACGGCTAAAATATGGAACTGTAACTGCTCTGGTGGGTCCTAGTGGTGCTGGAAAAAGTACAGTAGTACAGTTATTGTCTCGTTTTTATGAGCCTACAAGAGGTTGTATAACAGTTGCAGGAGAGGATGTCCGAACATTTGACAAGAGTGAATGGGCCCGGGTTGTCTCTATTGTAAATCAAGAGCCTGTTCTGTTTTCGGTGTCTGTTGGAGAAAATATAGCATATGGGCTCCCAGATGAAGATGTTTCTAAAGAAGATGTGATTAAGGCAGCGAAAGCTGCAAATGCTCATGACTTTATAATTTCACTTCCACAGGGCTATGATACACTTGTTGGCGAGCGTGGAGGTCTACTGAGTGGAGGACAGAGACAGAGAATTGCTATTGCCCGAGCTCTCCTAAAGAATGCTCCTATCCTTATACTTGACGAGGCTACGAGTGCCCTGGATGCTGTGAGTGAGCGCTTGGTCCAGGATGCTCTCAACCATTTGATGAAGGGAAGGACAACATTAGTAATAGCTCACCGATTAAGCACAGTCCAAAATGCCTATCAAATTGCAGTTTGTTCTGAGGGGAGGGTTGCAGAACTAGGCACCCATTTTGAGCTATTGGCCAAGAAGGGCCAATATGCTTCACTGGTTGGTACTCAAAGGCTTGCATTTGAATAA 1529 0.274 LQELNLLKKLHERIKLQIQQQNERYVKANNKGKRNMIFEEGDWVWLHLRKERFPQKRKSKLSPRGDGPFQLLQRINNNTYRLDLPSDYGVSPTFNVSDLKPFVGASDDEGESLDLRTNPSQEGGDGGRAWTKDPTTRAMARRLHEDLTTLEFGGPRVLSHGLYSDHHYYCFQYVVQGLVNTFGDLRGTLAAVERINSVLSGAPVDDALAYGLERELKQKTMDDESYKLVLANISTENNQKNYLHYMSALKTSSNLCNLAWSGDICLEDVYFSYPLRPDVEILNGLNLRLKYGTVTALVGPSGAGKSTVVQLLSRFYEPTRGCITVAGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEDVSKEDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAYQIAVCSEGRVAELGTHFELLAKKGQYASLVGTQRLAFE 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00593 508 Coils Coil 4 31 - -
Cca08g00593 508 MobiDBLite consensus disorder prediction 107 132 - -
Cca08g00593 508 CDD ABC_MTABC3_MDL1_MDL2 264 503 - -
Cca08g00593 508 Pfam ABC transporter 282 433 IPR003439 GO:0005524
Cca08g00593 508 ProSitePatterns ABC transporters family signature. 405 419 IPR017871 GO:0005524
Cca08g00593 508 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 168 506 - -
Cca08g00593 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 503 IPR027417 -
Cca08g00593 508 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 168 506 IPR039421 -
Cca08g00593 508 SMART AAA_5 291 465 IPR003593 -
Cca08g00593 508 Gene3D - 262 505 IPR027417 -
Cca08g00593 508 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 264 502 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00593 Cca-Chr8 10058533 10060895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00593 261 508 Calmodulin-binding Proteins AT2G36910 55.378 1.81e-76 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00593 K05657 - ccaj:109790742 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00593 08 10058533 10060895 Cca08g00593 08 10058533 10060895 ECH