Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00586 ATGGACGTGGACGGGGGCAGCAAGCGCGTGTACAATCGCCTCGGTGCGGACGCGAAGCACCAGAAAGTGTGCTTCCACTGGCAAGCGGGCAAGTGCAACCGCTACCCCTGCCCCTTCCTGCACAGCGAGTTGCCCCCTTCCAACGGCGCCTCCTCCAAACGGGCCCACGAAGCTTCGGGCCTGTCTGGGCCGCGCCGCGGCCCGAATTTCAACAACACGTGGGGTCgcggcgggggacggggcggaggaggaggcggtagaggggcggcggttgtgaaggccgaCAAAGTTTGTAATTATTGGATTCAGGGGAATTGTAGTTATGGAGAGAGGTGTAAGTTCCTACACTCTTGGAGTGTGGGGGATGGGTTCTCGATGCTCACCCAGCTTGAAGGGCATCAAAAGGCTGTGAGTGCGATTGCCTTTCCCTCTGGTTCGGATAAGCTTTATACTGGAAGCACTGATGAGACTGTAAGGATTTGGGACTGCCAGTCTGGAAAGTGTATAGGGGTGGTCAATCTTGGTGGTGATGTAGGTTGTATGATCAGTGAAGGCCCCTGGGTTTTTGTTGGGATACCCAATTTTGTTAAGGCCTGGAACACACAAAATTTAATGGAGCTAAGTCTTAACGGCCCTGTTGGACAAGTTTATGCACTTGTTGTGAATAATGACATGCTCTTTGCCGGTACACAGGATGGATCTATATTGGCATGGAAGTTTAATGTAGTTACCAACTGCTTTGAGCCGGCTGCATCACTTAAAGGTCATTCTCGTGGTGTTGTTTCATTAGTTGTTGGTGCTAATAGACTCTACTCTGGTTCAATGGACAATACAATAAGAGTATGGAACCTTGAAACCTTGCAGTGCTTACAAACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTTTATCTTGTTCATTGGACAAAACAGTGAAGGTCTGGTATGCTACAGAAAGTGGAAACTTGGAAGTGACATATACTCACAATGAAGAGCATGGTATACTTACCCTATGTGGAATGCATGATTCACAAGGCAAGCCTGTTTTGCTGTGCTCTTGCAATGATAATACTGTGCGCCTCTATGATCTGCCATCATTTGCAGAGAGAGGTAAGATAATGACAAAACAAGAGGTACGAGCAATTCAGATAGGGCCTAACGGCATTTTCTTCACCGGTGACGGTACTGGTCAAGTAAGAGTGTGGAATTGGGTAGCGGAGGCAACCAGTACCATCCAATAA 1263 0.4568 MDVDGGSKRVYNRLGADAKHQKVCFHWQAGKCNRYPCPFLHSELPPSNGASSKRAHEASGLSGPRRGPNFNNTWGRGGGRGGGGGGRGAAVVKADKVCNYWIQGNCSYGERCKFLHSWSVGDGFSMLTQLEGHQKAVSAIAFPSGSDKLYTGSTDETVRIWDCQSGKCIGVVNLGGDVGCMISEGPWVFVGIPNFVKAWNTQNLMELSLNGPVGQVYALVVNNDMLFAGTQDGSILAWKFNVVTNCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKVWYATESGNLEVTYTHNEEHGILTLCGMHDSQGKPVLLCSCNDNTVRLYDLPSFAERGKIMTKQEVRAIQIGPNGIFFTGDGTGQVRVWNWVAEATSTIQ 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00586 420 Gene3D - 108 207 IPR015943 GO:0005515
Cca08g00586 420 SUPERFAMILY WD40 repeat-like 117 411 IPR036322 GO:0005515
Cca08g00586 420 Gene3D - 208 420 IPR015943 GO:0005515
Cca08g00586 420 ProSiteProfiles Zinc finger C3H1-type profile. 93 119 IPR000571 GO:0046872
Cca08g00586 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 130 162 - -
Cca08g00586 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 286 - -
Cca08g00586 420 MobiDBLite consensus disorder prediction 46 86 - -
Cca08g00586 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 130 171 IPR001680 GO:0005515
Cca08g00586 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 292 IPR001680 GO:0005515
Cca08g00586 420 SMART c3hfinal6 94 118 IPR000571 GO:0046872
Cca08g00586 420 SMART c3hfinal6 20 43 IPR000571 GO:0046872
Cca08g00586 420 PRINTS G protein beta WD-40 repeat signature 149 163 IPR020472 -
Cca08g00586 420 PRINTS G protein beta WD-40 repeat signature 270 284 IPR020472 -
Cca08g00586 420 PRINTS G protein beta WD-40 repeat signature 310 324 IPR020472 -
Cca08g00586 420 ProSiteProfiles Zinc finger C3H1-type profile. 18 44 IPR000571 GO:0046872
Cca08g00586 420 Pfam WD domain, G-beta repeat 288 322 IPR001680 GO:0005515
Cca08g00586 420 Pfam WD domain, G-beta repeat 249 283 IPR001680 GO:0005515
Cca08g00586 420 Pfam WD domain, G-beta repeat 127 162 IPR001680 GO:0005515
Cca08g00586 420 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 417 - -
Cca08g00586 420 PANTHER - 1 417 IPR044715 -
Cca08g00586 420 SMART WD40_4 123 162 IPR001680 GO:0005515
Cca08g00586 420 SMART WD40_4 373 410 IPR001680 GO:0005515
Cca08g00586 420 SMART WD40_4 246 283 IPR001680 GO:0005515
Cca08g00586 420 SMART WD40_4 327 370 IPR001680 GO:0005515
Cca08g00586 420 SMART WD40_4 202 239 IPR001680 GO:0005515
Cca08g00586 420 SMART WD40_4 286 323 IPR001680 GO:0005515
Cca08g00586 420 SUPERFAMILY CCCH zinc finger 94 117 IPR036855 GO:0046872
Cca08g00586 420 ProSitePatterns Trp-Asp (WD) repeats signature. 270 284 IPR019775 -
Cca08g00586 420 Pfam Zinc finger domain 98 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00586 Cca-Chr8 9854580 9861069 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00586 225 410 Miscellaneous Gene Families AT5G08390 25.758 1.39e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca08g00586 WD40 0.0014 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00586 - - gmx:100775542 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00586 08 9854580 9861069 Cca08g00586 08 9854580 9861069 ECH