Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00583 ATGGGTAAGGGGGGAATGTCAATTGATGATCATGGAGAAGGCAAAGAAGAGAATATGGCTGCTTGGCTTGTAGATATTAACACTCTTAAGATCCAACCTTTCAAGCTTCCTACTCTCGGACCCCATGATGTCAGAATCAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAGACACTGAGGTGTGCACACTTTATAGTTAAAGAACCAATGGTTATTGGTCATGAGTGTGCTGGGATCATAGAAGAAGTTGGTAGTCAGGTAAAGAGCTTGGTACCTGGTGACCGTGTGGCGATTGAGCCTGGGATTAGTTGTTGGCGATGCGACCACTGCAAACAGGGTCGTTATAACTTATGCCCTGAGATGAAGTTTTTTGCTACTCCACCAGTTCATGGTTCCCTGGCTAATCAGATAGTGCATCCAGCAGACCTATGTTTTAAGCTGCCAGACAATGTGAGCCTGGAGGAGGGGGCAATGTGTGAGCCCCTAAGTGTTGGTGTTCATGCTTGTAGGAGAGCTAATATTGGACCAGAAACAAATGTGTTGATCATGGGAGCAGGACCCATAGGACTTGTTACAATGCTCTCAGCTCGCGCTTTTGGGGCCCCCAGGACAGTCATCGTGGATGTGGATGACCATCGTTTATCTGTTGCAAAATCTCTTGGTGCAGATGATATTGTTAAAGTTTCAACAAACATTCAGGATGTGGATGAAGAAGTTGTGCAGATACATAAGGCTATGGGGGCTGGTATAGATGTTACCTTTGATTGTGCTGGTTTTGACAAAACCATGTCTACAGCACTGAGTGCTACTAAGCCAGGTGGCAAAGTTTGCCTAGTTGGAATGGGTCATTCTGAAATGACTGTCCCACTCACCCCAGCTGCAGCAAGGGAAGTGGATGTGGTTGGAGTTTTTCGCTATATGAACACATGGCCTCTTTGCCTTGAGTTTCTAAGGAGCGGCAAAATCGATGTGAAACCCCTTATAACTCACAGGTTTGGGTTTTCTCAGAGGGAAGTGGAAGAAGCCTTTGAAACAAGTGCTCGTGGTGGTAATGCCATCAAGGTCATGTTCAATCTTTAG 1095 0.4584 MGKGGMSIDDHGEGKEENMAAWLVDINTLKIQPFKLPTLGPHDVRIRMKAVGICGSDVHYLKTLRCAHFIVKEPMVIGHECAGIIEEVGSQVKSLVPGDRVAIEPGISCWRCDHCKQGRYNLCPEMKFFATPPVHGSLANQIVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLSARAFGAPRTVIVDVDDHRLSVAKSLGADDIVKVSTNIQDVDEEVVQIHKAMGAGIDVTFDCAGFDKTMSTALSATKPGGKVCLVGMGHSEMTVPLTPAAAREVDVVGVFRYMNTWPLCLEFLRSGKIDVKPLITHRFGFSQREVEEAFETSARGGNAIKVMFNL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00583 364 Pfam Alcohol dehydrogenase GroES-like domain 41 152 IPR013154 -
Cca08g00583 364 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 78 92 IPR002328 GO:0008270|GO:0016491
Cca08g00583 364 SMART PKS_ER_names_mod 24 362 IPR020843 GO:0016491
Cca08g00583 364 Gene3D - 169 309 - -
Cca08g00583 364 CDD sorbitol_DH 20 363 IPR045306 GO:0016616
Cca08g00583 364 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 328 IPR036291 -
Cca08g00583 364 SUPERFAMILY GroES-like 18 190 IPR011032 -
Cca08g00583 364 PANTHER L-IDONATE 5-DEHYDROGENASE 13 364 - -
Cca08g00583 364 Gene3D - 28 351 - -
Cca08g00583 364 Pfam Zinc-binding dehydrogenase 192 322 IPR013149 -
Cca08g00583 364 PANTHER SORBITOL DEHYDROGENASE 13 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00583 Cca-Chr8 9816057 9822780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00583 31 297 Monolignol Biosynthesis Gene Families AT4G37980 28.417 2.79e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00583 K00008 - gmx:100820630 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00583 08 9816057 9822780 Cca08g00583 08 9816057 9822780 ECH