Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00576 ATGGGTGAAGTTGGACCTTCAATAACACTGGCCAGCTTATCAGAAATTCTAGCATTTGTTGTAGGATCATTTGTTTCTATGCCAGCATGCCGTGTATTTAATGCTTATCAGAAATTTAATGAGTTTGAACAGCAGATGGAGATGGTTGGGAGGATTAGGCACGACAATGTGACTGCACTAAGAGCATATTACTATTCAAAGGAGGAGAAACTTATGGTGTATGATTACTACGAACAGGACAGTGTCTCTTTAATGTTGCATAGTCATAACATGAGAACGTGTGGAAGACAACAGAATTTGGATGATATGGAACAAAGCACACGTGGAATGAGTATTGAATTTGAAGAAAGTTACGTAGGTTACGAAAATGAAGAGGAAGATGAGTACATTGAAGATTTGTTTGACAAATGCGATGAAGTTGATAATGGGGTTGGTGACATGTCTGTTTCACAGTCAGAATCAATATATAGTTATGAAGTGTCGTTATCTCCAGCATTCAGTGATGCAGTAGCAAGTGATCCAGAGAAATACAGTGAAGCGTTTCTTGGGAAGCGAAACGCAGATTATTGTAATTGGATTCTTGACTCGGAGAAGTGGGGAGGTGCAATTGAACTTTCGATATTAGCAGATTATTATGGACGTGAAATTGCAGCATATGATATCCAGACAACCCGATGTGATTTGTATGGTCAGGTTGGTGTTGATAACATGTGCATAATTGTAGATGTTGTGAAACGGCAACCCTTAGGTTTACCAATTGAAGAAAAAATAAGCAATTCAATGGGTGAAGTTGGACCTTCAATAACACTGGCCAGCTTATCAGAAATTCTAGCATTTGTTGTAGGATCATTTGTTTCTATGCCAGCATGCCGTGTATTTAATGCTTATCAGAAATTTAATGAGTTTGAACAGCAGATGGAGATGGTTGGGAGGATTAGGCACGACAATGTGGCTGCACTAAGAGCATATTACTATTCAAAGGAGGAGAAACTTATGGTGTATGATTACTACGAACAGGACAGTGTCTCTTCAATGTTGCATGGCAATAGGCAGGAAAGAGATGGATTGCTGACACGATATATGAAGGTAAAGTCATATTTAGTTCACGCTTTTTGA 1116 0.388 MGEVGPSITLASLSEILAFVVGSFVSMPACRVFNAYQKFNEFEQQMEMVGRIRHDNVTALRAYYYSKEEKLMVYDYYEQDSVSLMLHSHNMRTCGRQQNLDDMEQSTRGMSIEFEESYVGYENEEEDEYIEDLFDKCDEVDNGVGDMSVSQSESIYSYEVSLSPAFSDAVASDPEKYSEAFLGKRNADYCNWILDSEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQVGVDNMCIIVDVVKRQPLGLPIEEKISNSMGEVGPSITLASLSEILAFVVGSFVSMPACRVFNAYQKFNEFEQQMEMVGRIRHDNVAALRAYYYSKEEKLMVYDYYEQDSVSSMLHGNRQERDGLLTRYMKVKSYLVHAF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00576 371 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 232 293 - -
Cca08g00576 371 ProSiteProfiles Sterol-sensing domain (SSD) profile. 1 36 IPR000731 -
Cca08g00576 371 Pfam Sterol-sensing domain of SREBP cleavage-activation 232 297 IPR000731 -
Cca08g00576 371 Pfam Sterol-sensing domain of SREBP cleavage-activation 1 37 IPR000731 -
Cca08g00576 371 Gene3D - 147 252 - -
Cca08g00576 371 PANTHER LRR RECEPTOR-LIKE KINASE 40 90 - -
Cca08g00576 371 PANTHER LRR RECEPTOR-LIKE KINASE 300 352 - -
Cca08g00576 371 SUPERFAMILY Protein kinase-like (PK-like) 295 350 IPR011009 -
Cca08g00576 371 SUPERFAMILY Protein kinase-like (PK-like) 35 90 IPR011009 -
Cca08g00576 371 ProSiteProfiles Sterol-sensing domain (SSD) profile. 232 296 IPR000731 -
Cca08g00576 371 PANTHER OS05G0588300 PROTEIN 40 90 - -
Cca08g00576 371 PANTHER OS05G0588300 PROTEIN 300 352 - -
Cca08g00576 371 Gene3D Phosphorylase Kinase; domain 1 286 336 - -
Cca08g00576 371 Gene3D Phosphorylase Kinase; domain 1 26 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00576 Cca-Chr8 9645983 9653254 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00576 162 232 C2H2 Transcription Factor Family AT1G50670 74.648 2.47e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00576 K13719 - ccaj:114915441 135.576