Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00575 ATGTTCCCTCACCAACACCGCCAACTTCCTCCTCAACCGCACTTCCTCCTCTACCATCCGCAAAACGCAGCTTCTTGGCGTCGTTTTCGAGGACCTGATTCGCGTTTCCAATTCCAACTCCGTTTTGTTCCCTTACTTTCTCATCCTCTGCGCCTCGAGAAAATGTACATCGTTCTCCACAAGATCAAAACGCTAATTGAAGATTGCTCCAATGGAAGAAACAAGTTCAATCTGGTCGTGCAAATCGAAACCGTCGTTGACACCTTCCACAGGCTCACCGGAGAACTTTCCACGCTCCTCGATGTTTTCCCTCTCCAAGAACTCCACCTAAACGGCAACGTTCAGGAACTCGTTATCCTCTTGCGAAAACAGTGCTCTGAATCCATACCGTTTGTCGGAGCCGAACAGATTTCTTGTGTTGGTGTTGATAACATGTGCATAATTGTAGATGTTGTGAAACGGCAACCCTTATGA 474 0.4747 MFPHQHRQLPPQPHFLLYHPQNAASWRRFRGPDSRFQFQLRFVPLLSHPLRLEKMYIVLHKIKTLIEDCSNGRNKFNLVVQIETVVDTFHRLTGELSTLLDVFPLQELHLNGNVQELVILLRKQCSESIPFVGAEQISCVGVDNMCIIVDVVKRQPL 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00575 157 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 48 138 - -
Cca08g00575 157 PANTHER U BOX DOMAIN-CONTAINING 48 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00575 Cca-Chr8 9645026 9645597 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00575 47 138 U-box Gene Family AT5G01830 44.565 1.92e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00575 - - ccaj:109792769 276.944