Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00563 ATGGGTAGGGAATGGCATTTTGCTGGAAGATTTTCTAAGAGAAGTGGTGTAGGATCAGCTGAAGAATCTGAAACACAAGCCCCTTCTGGTTGCATGTGTGCTGTTtttcagttctttgattttcatccatttcactttcatAACATAAACCACCAACACCAACAAAGTTCTTTCAAACCACCCTCATGCACCCCTGAAGACCATACCACAGTCTCTAAAGGTGCTGAAGCACCTAGGAACAGCTTGGAATCAGAGGATGGTGATGGAACAATTTCATCTCTCTCATCAAAAGAAGATTTTAAAATTCCTAAGAATATTATTCAAATCAAGACAAGTGGAGGCACAAGAACAAGTGGTGGAAATTTGAATGACTTGTCCTCAGAAATCAGCAGCTCTCCAGGGACAAAGACACCAACTTTGGTAGCTAGATTGATGGGTTTGGATCTTCTCCCAGGTGCACAATCACCCtctttttcttcatcttcttcttcttcATGTGTTGCCACTCCAGACACACAAGGCAATGTGCCACATCTGCAACACCTGAGACACAAGCAACATGTCCAAACAAAGCACAGAAACAGCATAGACAGTAGTGACATTGCAGCCACAAGATCTTTGCCTGATACACCAAGAATCTCCTTAGCAAGAAGATCAGATGTTGACCATCACCACAGGCTATCACTCCAAATCATCAACAAGGAAAACATGAACCTTGGTGAGGATTTTGAGCTCCCTAGGCTCTCACTTTCCAAAAGGAAGTGCGATGAGAATCACAATGGGAGGAGTCCAAGCCACTATGCTAGGCAAATTGTCAAACAGGTTAAGGAGAGTGTGAGTAGAAAAGTTGGTCAAGACATCACCAACACTAGTCTCAAAACAAGAGAAGAATTTGTAGGCCAAATAAGAAGCAAGAAATCCCACAAAACATCATCACTTAAATCAATTGATGAAACAGAAACCAGCCACTCAAACTCATCTTCCTATTCCCCAAGGCTTAGATTCATTGAAAAGCACAAACCAAGCACAACAACAACAACTCCATCACCACTCACTCCAAAAGATCAAAACATACTCAAACTACCACCACCTACTCCTCCTCAGGTTAACACTCAACCTCAGCTTCCAAGAGTCTTAACAAAACCAAAGCCAGAGCAGAAAGAGTTTCAGAGCAATAAATCTGTCCCAAAATGCAAAAGGGTAACCAATGAAAAGTTCAACTCAAGGCTCAAAAGGCCTCCACAGACATCAGACATAATCAGAAACAAGCAAGAAGAACCATTCATCATTCGTCCCACATCGCCTAGTAGTAGAGCCAGTGACATCAAAAGCACCAAAACCAAGAAAACTCACCCATTGTCAAGCAATCTCAACAATGTACCAAATGTTCTACCTGTCAAGACAGACCCTTCTCCTCCAGCAACCAAAATTCCTCCCAAACAGTCACAACAGGTGTTTGATACCGAACGTGAAGAGTCGAAAAGCAGCTGGTCATCACAGTTATCTAGTTGTTCGCGCCACCATAAGTACAaacaagaacaaacaataacaacaacaCTCGCCACCCGAGACAACAACCTTAACGGTGTCTCTGCCTCCTCCACCGCCGTTGAACAAGAACTCCACTACATCACTTCAATCCTCGCCGTAAACCCCCACCCACCACTCGACCCATCGATCTTCCACCACCTCGAACACAAAGATCGCAACTTTGCCCCGAACCACCATCTGGGTCACCGTTGGAACCGGCGGTTACTGTTCGATGTGGTGGACGAGGTTTTGGGGGAGATCGTGGGGCCCAGAGAGGGAGAGAGAAGAAAGAGGCTTTGGTTTTGGAGGAAGGGTAAGGGTGGTGTTGAAGGGTTGGTGGAGAGGGTGTGGAAGAGAGTTGGGGAGTTCCCACGTGCCAAGTGTGAGGTGTTGGAGGACATTGATGGGTTGATTGAAGGGGAGAGAGAGATGGATATTGGTGAGGGAATGGAGGAAGAAGGGGAAGGGGTGGTGGCAGAGATTGAAGGGAACATATGGGACACGTTGCTGCATGAAACAGTTATGGTTGTGAATTGCTGGCCCAGTGTGGGAAATATGGAAATTCAGAACAAATTATTGTTTAGTGGAGAACTAAAGTGTGTTTATGACTTGGCTTCATTTCAATATCATATATAG 2166 0.434 MGREWHFAGRFSKRSGVGSAEESETQAPSGCMCAVFQFFDFHPFHFHNINHQHQQSSFKPPSCTPEDHTTVSKGAEAPRNSLESEDGDGTISSLSSKEDFKIPKNIIQIKTSGGTRTSGGNLNDLSSEISSSPGTKTPTLVARLMGLDLLPGAQSPSFSSSSSSSCVATPDTQGNVPHLQHLRHKQHVQTKHRNSIDSSDIAATRSLPDTPRISLARRSDVDHHHRLSLQIINKENMNLGEDFELPRLSLSKRKCDENHNGRSPSHYARQIVKQVKESVSRKVGQDITNTSLKTREEFVGQIRSKKSHKTSSLKSIDETETSHSNSSSYSPRLRFIEKHKPSTTTTTPSPLTPKDQNILKLPPPTPPQVNTQPQLPRVLTKPKPEQKEFQSNKSVPKCKRVTNEKFNSRLKRPPQTSDIIRNKQEEPFIIRPTSPSSRASDIKSTKTKKTHPLSSNLNNVPNVLPVKTDPSPPATKIPPKQSQQVFDTEREESKSSWSSQLSSCSRHHKYKQEQTITTTLATRDNNLNGVSASSTAVEQELHYITSILAVNPHPPLDPSIFHHLEHKDRNFAPNHHLGHRWNRRLLFDVVDEVLGEIVGPREGERRKRLWFWRKGKGGVEGLVERVWKRVGEFPRAKCEVLEDIDGLIEGEREMDIGEGMEEEGEGVVAEIEGNIWDTLLHETVMVVNCWPSVGNMEIQNKLLFSGELKCVYDLASFQYHI 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00563 721 PANTHER LOW PROTEIN: M-PHASE INDUCER PHOSPHATASE-LIKE PROTEIN 1 689 - -
Cca08g00563 721 MobiDBLite consensus disorder prediction 111 134 - -
Cca08g00563 721 Pfam Domain of unknown function (DUF4378) 552 682 IPR025486 -
Cca08g00563 721 MobiDBLite consensus disorder prediction 52 95 - -
Cca08g00563 721 Pfam DUF761-associated sequence motif 126 155 IPR032795 -
Cca08g00563 721 MobiDBLite consensus disorder prediction 449 465 - -
Cca08g00563 721 MobiDBLite consensus disorder prediction 1 24 - -
Cca08g00563 721 MobiDBLite consensus disorder prediction 340 354 - -
Cca08g00563 721 MobiDBLite consensus disorder prediction 298 316 - -
Cca08g00563 721 MobiDBLite consensus disorder prediction 317 332 - -
Cca08g00563 721 MobiDBLite consensus disorder prediction 298 375 - -
Cca08g00563 721 MobiDBLite consensus disorder prediction 357 371 - -
Cca08g00563 721 MobiDBLite consensus disorder prediction 408 422 - -
Cca08g00563 721 MobiDBLite consensus disorder prediction 52 77 - -
Cca08g00563 721 MobiDBLite consensus disorder prediction 408 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00563 Cca-Chr8 9391319 9395301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00563 107 683 TRM (TON1 Recruiting Motif) Superfamily AT5G62170 35.726 2.81e-56 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00563 - - gmx:100791539 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00563 08 9391319 9395301 Cca08g00563 08 9391319 9395301 ECH
Cca08g00563 08 9391319 9395301 Cca02g02305 02 43729486 43732944 PCT