LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca08g00560	ATGGGAAGAGGAAGGGTTGTTCTTGAGAGAATAGAGAACAAGATAAACCGTCAAGTAACGTTCTCAAAGCGCAGAAGTGGGTTACTGAAGAAGGCCTTTGAGCTTTCTGTGCTGTGTGATGCTGAAATAGCACTCATCATCTTTTCTAGCCGTGGCAAGCTTTTTCAGTACAGCAGCACTGATATTAACAAAATCATCGAGAGGTATCGCCAATGTCGTTACAGCAAGTCACAGGCTGGCGATTCATCAGAACTTGAATCACAGAACTCATACCATGAATTCTTGAAGTTAAGATCAAAATATGAATCTCTAGAGAGGACCCAAAGGCATTTTCAAGGAGAAGAACTTGAGCCACTTAGCTTTAAAGAATTACAGAGCCTCGAGAAACAACTAGACATAACTCTCGCACTAACTCGACAGCATCAAGCGAAGAAACTCATGGCCCGAGCGGATGAATTACGCGAAAAGGTGTACAAGTTGGAAGAACTTAACAAACAATTGGAGTCTAAGGAAAAAGATGAATTCTCAACCCTCATCCTTGACAATAACAATTATGTTCAATTGCATGCTACACAAGTAGATCAATTTGAATCTGGGACAACACTAAACACATGTAGGTTTCAACATCAAGAAGTTGTTTCAAAGGAAAAAACAATTGATACAGGAACGATGGATAGTCAAGACAATCTCAACAGAAATAATGGATGGTTGTAG	714	0.3992	MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSSTDINKIIERYRQCRYSKSQAGDSSELESQNSYHEFLKLRSKYESLERTQRHFQGEELEPLSFKELQSLEKQLDITLALTRQHQAKKLMARADELREKVYKLEELNKQLESKEKDEFSTLILDNNNYVQLHATQVDQFESGTTLNTCRFQHQEVVSKEKTIDTGTMDSQDNLNRNNGWL	237

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca08g00560	237	PANTHER	MADS-BOX TRANSCRIPTION FACTOR	1	237	-	-
	Cca08g00560	237	Pfam	K-box region	84	170	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Cca08g00560	237	MobiDBLite	consensus disorder prediction	218	237	-	-
	Cca08g00560	237	ProSiteProfiles	K-box domain profile.	87	178	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Cca08g00560	237	MobiDBLite	consensus disorder prediction	223	237	-	-
	Cca08g00560	237	SUPERFAMILY	SRF-like	2	76	IPR036879	GO:0003677\|GO:0046983
	Cca08g00560	237	Coils	Coil	143	173	-	-
	Cca08g00560	237	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Cca08g00560	237	PANTHER	MADS BOX PROTEIN	1	237	-	-
	Cca08g00560	237	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Cca08g00560	237	CDD	MADS_MEF2_like	2	75	IPR033896	GO:0000977\|GO:0045944
	Cca08g00560	237	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Cca08g00560	237	Gene3D	-	13	96	IPR036879	GO:0003677\|GO:0046983
	Cca08g00560	237	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Cca08g00560	237	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Cca08g00560	237	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Cca08g00560	237	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca08g00560	Cca-Chr8	9316160	9331111	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca08g00560	1	170	MADS-box Gene Family	AT2G45650	56.471	1.10e-58	184

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Cca08g00560		K-box	2.6e-19	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca08g00560	K09264		-	gmx:100793681	414.461

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca08g00560	08	9316160	9331111	Cca08g00560	08	9316160	9331111	ECH
	Cca02g02309	02	43772910	43798269	Cca08g00560	08	9316160	9331111	PCT