Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00559 ATGTGTGTGAGAAAGGATGTGTGTGGTGGCACAAAAAAGGAAAGGGGTACCCACGTTGGAATCAGATCAAAATATGAATCTCTAGAGAGGACCCAAAGGCATTTTCAAGGAGAAGAACTTGAGCCACTTAGCTTTAAAGAATTACAGAGCCTCGAGAAACAACTAGACATAACTCTCGCACTAACTCGACAGCATCAAGCGAAGAAACTCATGGCCCGAGCGGATGAATTACGCGAAAAGTACTCCATGCATTTGTTTTCCTTGTTTCACAACTTGGTGCTATAG 285 0.4316 MCVRKDVCGGTKKERGTHVGIRSKYESLERTQRHFQGEELEPLSFKELQSLEKQLDITLALTRQHQAKKLMARADELREKYSMHLFSLFHNLVL 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00559 94 Pfam K-box region 21 82 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca08g00559 94 ProSiteProfiles K-box domain profile. 11 94 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca08g00559 94 PANTHER MADS BOX PROTEIN 18 81 - -
Cca08g00559 94 PANTHER MADS-BOX TRANSCRIPTION FACTOR 18 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00559 Cca-Chr8 9307514 9309049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00559 21 80 MADS-box Gene Family AT3G61120 48.333 6.47e-12 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00559 K09264 - gmx:100793681 112.464