Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00550 ATGAACTTGAAACAATGCTGTTGTTTCTTTTTAGATGAAGGACAAGGCAAAATACAGAAGAACAGTAGGGATTATCCATGGGAAATGTACACCTTGAAGGAGTTGCTTCGCGCAACAAAAGACTTTCATCAAGATAATAAGATCGGAGAGGGTGGATTTGGAAGTGTTTATTTTGGTCGAACAAGTAAAGGCGTTCAGATTGCAGTGAAGCGGTTGAAGACAATGACTGCAAAGGCAGAGATGGAGTTTGCAGTGGAAGTGGAAGTGTTAGGAAGAGTGAGGCATAAGAATTTGTTGGGGTTGAGGGGATTCTATGCAGGAGGAGATGAAAGGTTGATTGTGTATGATTACATGCCTAACCATAGCTTGCTCACCCATTTGCATGGTCCACTTGCTAAGGAATGTCAACTAGATTGGCCTAGAAGAATGAGCATAGCAATTGGAGCTGCTGAAGGTTTAGCGTATTTGCACCATGAGTCAACTCCTCACATCATACACAGAGATATAAAGGCAAGCAATGTTCTTCTAGACCATGAATTTCAAGCCAAGGTTGCTGATTTTGGTTTTGCTAAGCTAGTACCAGATGGTGTAACTCATCTTACCACGAAGGTCAAAGGAACCCTAGGATATTTGGCACCAGAATACGCAATGTGGGGGAAAGTTTCTGAAAGTTGTGATGTTTACAGCTTTGGAATTTTACTTTTGGAGATTATTAGTGCCAAGAAACCAATTGAGAAATTTCCTGGGGGAGTTAAAAGGGACATTGTTCAATGGATCACACCGTATGTGAACAAGGGTCTCTTCAACAATGTTGCGGATCCAAAGTTGAAGGGGAAATTTGATTTGGAGCAATTGAAAACTATGATCACCATTGCTCTTAGATGCACCGATAATAGTGCAGACAAAAGGCCTAGCATGAAAGAGGTGGTGGATTGGCTCAAGAATGGTACAGGAAGCACTTAG 963 0.4164 MNLKQCCCFFLDEGQGKIQKNSRDYPWEMYTLKELLRATKDFHQDNKIGEGGFGSVYFGRTSKGVQIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGPLAKECQLDWPRRMSIAIGAAEGLAYLHHESTPHIIHRDIKASNVLLDHEFQAKVADFGFAKLVPDGVTHLTTKVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKFPGGVKRDIVQWITPYVNKGLFNNVADPKLKGKFDLEQLKTMITIALRCTDNSADKRPSMKEVVDWLKNGTGST 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00550 320 Gene3D Transferase(Phosphotransferase) domain 1 118 317 - -
Cca08g00550 320 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00550 320 Pfam Protein kinase domain 42 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00550 320 ProSitePatterns Protein kinases ATP-binding region signature. 48 70 IPR017441 GO:0005524
Cca08g00550 320 Gene3D Phosphorylase Kinase; domain 1 12 117 - -
Cca08g00550 320 SUPERFAMILY Protein kinase-like (PK-like) 23 315 IPR011009 -
Cca08g00550 320 CDD STKc_IRAK 48 315 - -
Cca08g00550 320 PIRSF ILK 13 316 - -
Cca08g00550 320 ProSiteProfiles Protein kinase domain profile. 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00550 320 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 6 318 - -
Cca08g00550 320 PANTHER OS01G0253100 PROTEIN 6 318 IPR045271 GO:0004714|GO:0006468
Cca08g00550 320 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00550 Cca-Chr8 8950517 8953441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00550 29 309 Trihelix Transcription Factor Family AT1G68690 45.263 1.95e-82 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Cca08g00550 Pkinase 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00550 - - gmx:100800710 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00550 08 8950517 8953441 Cca08g00550 08 8950517 8953441 ECH
Cca08g00550 08 8950517 8953441 Cca02g02317 02 43893330 43895151 PCT