Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00549 ATGCCCCACCAGAGTTTACAAAGGCAAAGGAAATATAAATATAGCAAGATGGATATGGCAGGTGAGGTGGATTCTAATCTTATATGGGAAGGATTTCAGAATCCTAGCATATCAGGCGAGTGGAAAGTAGTCTCAAACCCTAACAACCGAAAACACTTGATTTTCTTGCTTTGGTATCTTTGCCACCCCAAAAAGATAGCATACACAATGATGAATCCTCTCCACACCAGTCAAGTGAGAAAGAGTAGCAAACACTTGCTTGTTGGGGAGAAAGAAGATTATAAGCTTGCCATGGATGAAAACAAGAAATGGATGCATAAGGAAACCGAAAGACAAAGAAGGCAAGAGATGGCAAAACACTGCACCACCCTTAGATCTCTTCTTCCTATAGAATATATTAAGGGAAAGCGCTCAATCGCTGATCATGTGTATGAGGCTATGAATTATATCAACCACCTACAAAATAAGGTGAAGCAATTGCAAGCAAAGAGAGATGAGTTAGCAAAGGTGTCTAATTTGAGTAATGTTGGTCCTGATGAGAAGGAAAGCTCTAGTACTACTAATCATCTTCCACCATTGGTTTTTGTTCACCCTTTCCCTGGAGGCCTTGAGATTATGTGCAGTTACAGCTTCAAGAAAAGTGTGTTTCCTATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGCCTTAACGTGGTTAGCACTACTTCCATCAAAAGAGATGGTAGATTTGTACACACTATTCAATCAGAGGATCCATTTCACCCGAATATGATTGCCACTGATTACTCTGAACTGCAAATAAAGCTTATGGAGGCAGTATCATTTTCAAGTAACAACTGTACTATAAAATATTTTGTGCATGACACAAGAATTTTGTTTATGTTTTCTTTCTTCTGA 900 0.3889 MPHQSLQRQRKYKYSKMDMAGEVDSNLIWEGFQNPSISGEWKVVSNPNNRKHLIFLLWYLCHPKKIAYTMMNPLHTSQVRKSSKHLLVGEKEDYKLAMDENKKWMHKETERQRRQEMAKHCTTLRSLLPIEYIKGKRSIADHVYEAMNYINHLQNKVKQLQAKRDELAKVSNLSNVGPDEKESSSTTNHLPPLVFVHPFPGGLEIMCSYSFKKSVFPMSRVLDILLKEGLNVVSTTSIKRDGRFVHTIQSEDPFHPNMIATDYSELQIKLMEAVSFSSNNCTIKYFVHDTRILFMFSFF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00549 299 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 81 282 IPR015660 GO:0003700|GO:0006357
Cca08g00549 299 PANTHER TRANSCRIPTION FACTOR 81 282 - -
Cca08g00549 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 153 IPR011598 GO:0046983
Cca08g00549 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 169 IPR036638 GO:0046983
Cca08g00549 299 CDD bHLH_AtORG2_like 102 175 - -
Cca08g00549 299 Coils Coil 150 173 - -
Cca08g00549 299 Gene3D - 94 176 IPR036638 GO:0046983
Cca08g00549 299 SMART finulus 107 159 IPR011598 GO:0046983
Cca08g00549 299 Pfam Helix-loop-helix DNA-binding domain 103 154 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00549 Cca-Chr8 8933775 8935519 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00549 102 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 42.614 5.90e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca08g00549 HLH 7.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00549 - - ccaj:109791323 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00549 08 8933775 8935519 Cca08g00549 08 8933775 8935519 ECH
Cca08g00549 08 8933775 8935519 Cca02g02319 02 43911592 43913147 PCT