Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00548 ATGTTTCCTTTACAACGAGGCAATGAGTTGGTTATCCAGTTTTCTAATAGCCCCCACCAGCATGAACACAAAATCTCCGAAGATCTGATTCTGGATGATTATGCTTCTCTGGATGTCAATGATTCGGACAGAAAAATCACAAGTAGCCGACCAAAGAAACTTTTCTGTGTGGCTGATAAGAAGAATCATGGCAACTCTAACGAACATAATAAGAAGAAGATGATTCATAAGGAGATTGAAAGGCAAAGGAGACAAGAAATGGCTACCTTCTTTGCCTCTCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGTGAATTACATAAAGCACATGCAGAACAATATCAAAGAACTTGGTGCCAGGAGAGATGAACTGAAGAAACTCTCCAATTATTCCAATACGGAAAATAATCAAGAGGGTTTGCATACATCTTGCAACTTTACTGTCCACGAGAATAATGGTATTATGGGAATCGAAATCACCAGCGGCTCCAGAGAAAAAAGGCCTAAACTTTCAAAGTTACTAAAGTTACTGATTGAAGAGGGACTTGAAATTGTTAGTTGCCTTTCAACAGAAGTCAATGGAAGATTGATCTACAGTGTTCAGTGTGAGGTTAACAATTCCAGCAGTGTAGATCTATCTGAGCTGAGAAAGAAAGTTTGCAATGCATTTCCAACATTCACGTGTTCTGATTAA 732 0.3934 MFPLQRGNELVIQFSNSPHQHEHKISEDLILDDYASLDVNDSDRKITSSRPKKLFCVADKKNHGNSNEHNKKKMIHKEIERQRRQEMATFFASLRSLLPLEFIKGKRSISDHMNEAVNYIKHMQNNIKELGARRDELKKLSNYSNTENNQEGLHTSCNFTVHENNGIMGIEITSGSREKRPKLSKLLKLLIEEGLEIVSCLSTEVNGRLIYSVQCEVNNSSSVDLSELRKKVCNAFPTFTCSD 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00548 243 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 240 - -
Cca08g00548 243 CDD bHLH_AtORG2_like 72 148 - -
Cca08g00548 243 SMART finulus 77 129 IPR011598 GO:0046983
Cca08g00548 243 Gene3D - 62 153 IPR036638 GO:0046983
Cca08g00548 243 Coils Coil 120 140 - -
Cca08g00548 243 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 240 IPR015660 GO:0003700|GO:0006357
Cca08g00548 243 Pfam Helix-loop-helix DNA-binding domain 72 124 IPR011598 GO:0046983
Cca08g00548 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 123 IPR011598 GO:0046983
Cca08g00548 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 141 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00548 Cca-Chr8 8904185 8907661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00548 65 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 45.455 1.55e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca08g00548 HLH 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00548 - - gmx:100780888 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00548 08 8904185 8907661 Cca08g00548 08 8904185 8907661 ECH
Cca08g00548 08 8904185 8907661 Cca02g02321 02 43948012 43949971 PCT