Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00547 atgccctcccgacaactctccacgtcaccctcacccgaccactacccgattccccaccccccgccacgtcatcaccaccaccaccaccaGTTTCTCGTCCCTCTCCTCGCCGCCACCGCCTCAACATGCTTCCTACTCCTTCTCCTCGTTATTTTCCTCCTCTTCCACCGCAAGCGCGCCGCCGCCGCCCTCCCCCCTCCGGCGACGTCCTCCCCGCCGCACCGCCTCCCGTTCTCCGTCCTCCGCCGCGCCACTCGCTCCTTCTCCACGCGCCTCGGCCACGGCGGCTTCGGCCCCGTCTTCGCCGGGGACCTCGGCGGCGCCCCGGTCGCCGTGAAGCTGATGGACTCGTCCCACCAGCAGCAGGGCGAGCGCGAGTTCCACAACGAGCTCTTCTTCGCGTCGAGGCTCATCTCGCGGCACGTGATCACCGCCACGCACTTCTCCTCCGACCCGAAACGACGCCGCTTCCTCTTGGTGTACGAGCTCATGCACAACGGAAACCTCCAAGACGCGCTCTTGCACCGCAAGTGCCCCGAACTCTCGAACTGGAACACGCGCTTCCAAGTTCTCCTCAACATCGCCAAGGGAATTTCCTACCTCCACTCCTGCGACCCTCCCGTTGTTCACGGTGACATCAAACCGAGTAACGTGCTTCTCGACCGCGATTTCTCCCCCAGGATCGGCGATTTCGGCTTGGCTCGGTTGCGCTCCGAGATTCCCAGGTTTATAATTGACGTTCTTGAATGTGGTACTTGTGTTGATAACGATGAAGAGAAGAAGAAGGAGGTTGATGATTGTGGGTCGGTGGAGAGTGCTCATAGTGCTTTTATGGAGGAAGGTAGCTTGGGTGTGGGGCAATCGCCGGAGACTGCGATGGATTCGCCGGAGACGGGGTTGGCGGTGGCCGCGGGGGCGTCGCCGGAGAAAGAGGGTGGGAAGAGGAATGGGAGAGGGTTGAAGAGTAACTCGGTGAGGGATTATGTGATGGAGTGGATGGGGAGGGAGAATAAGGAGAGGGTGAATGGTGGAGTTGAATGTGGAGATGTGGagaaaaaggagaagaagaagaagaagaagagaaggaagagggaattggaaTGGTGGGAGTCAATGGAGGAGGAAAAGTTCGATGGGGTTGTTAAGGGGAAGAGAAGGACTGTGAGGGAATGGTGGAAGGAGGAGTGTTGCGAGGAGGATGAAAAGAAGAAAAAGaagaacaagaacaagaacaagaacaagaaGAatgtgaagagtgatgatgatgagaatggtgatgattggtgggtgagtgacgatgCATTGGATAGGGACAGGAGGAAGGTCAAGAGTAGGAGTAGGAATAACCGTGGGAACATGGAGTGGTGGATGGATGGGTTGAGTGGTGAATTGTGGAGAGGGAGGAGGAATAACAGCTTTGATTCTGCTAGTGGGGAGATTCCAAAGAGTGGTGGTGTGAGTAGTACTCCTAGTATGAGGGGAACTGTGTGTTATGTTGCTCCTGAGTGTGGCTATGGTGGGGATGTGTCCGAGAAGTGTGATGTGTATAGCTTTGGGGTGGTGTTGCTTGTGATCATTTCTGGGCGGCGCCCACTTCAGGTGAGTGGTTCGCCCTTGTCTGAGTTTCAGAGGGCGAATCTATTGTCGTGGGCGCGCCATTGTGCCAAAAATGGGAAGCTCATTGAGCTGGTTGATGAGTCTATTGAGATGTTGGATAAGGAGCAGGCTCTTCTCTGCATCAAGGTGGCTTTGCTTTGCTTGCTAAAGTCACCTGATCGTCGTCCTTCAATGAAGGAGGTTGTAGGAATGCTTAGTGGGGACTTGGAGCCACCCCAATTGCCCGTTGAGTACTCACCTTCAACCCCTTCTAGGTTCCCTTTCAAGTCTAGGAAAAAAGGCCGGTGA 1905 0.4966 MPSRQLSTSPSPDHYPIPHPPPRHHHHHHQFLVPLLAATASTCFLLLLLVIFLLFHRKRAAAALPPPATSSPPHRLPFSVLRRATRSFSTRLGHGGFGPVFAGDLGGAPVAVKLMDSSHQQQGEREFHNELFFASRLISRHVITATHFSSDPKRRRFLLVYELMHNGNLQDALLHRKCPELSNWNTRFQVLLNIAKGISYLHSCDPPVVHGDIKPSNVLLDRDFSPRIGDFGLARLRSEIPRFIIDVLECGTCVDNDEEKKKEVDDCGSVESAHSAFMEEGSLGVGQSPETAMDSPETGLAVAAGASPEKEGGKRNGRGLKSNSVRDYVMEWMGRENKERVNGGVECGDVEKKEKKKKKKRRKRELEWWESMEEEKFDGVVKGKRRTVREWWKEECCEEDEKKKKKNKNKNKNKKNVKSDDDENGDDWWVSDDALDRDRRKVKSRSRNNRGNMEWWMDGLSGELWRGRRNNSFDSASGEIPKSGGVSSTPSMRGTVCYVAPECGYGGDVSEKCDVYSFGVVLLVIISGRRPLQVSGSPLSEFQRANLLSWARHCAKNGKLIELVDESIEMLDKEQALLCIKVALLCLLKSPDRRPSMKEVVGMLSGDLEPPQLPVEYSPSTPSRFPFKSRKKGR 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00547 634 MobiDBLite consensus disorder prediction 414 430 - -
Cca08g00547 634 Pfam Protein kinase domain 89 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00547 634 MobiDBLite consensus disorder prediction 402 430 - -
Cca08g00547 634 ProSiteProfiles Protein kinase domain profile. 86 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00547 634 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 306 - -
Cca08g00547 634 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 316 634 - -
Cca08g00547 634 Pfam Protein tyrosine and serine/threonine kinase 490 603 IPR001245 GO:0004672|GO:0006468
Cca08g00547 634 MobiDBLite consensus disorder prediction 605 634 - -
Cca08g00547 634 SUPERFAMILY Protein kinase-like (PK-like) 83 619 IPR011009 -
Cca08g00547 634 Gene3D Transferase(Phosphotransferase) domain 1 472 610 - -
Cca08g00547 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Cca08g00547 634 MobiDBLite consensus disorder prediction 1 26 - -
Cca08g00547 634 Gene3D Transferase(Phosphotransferase) domain 1 74 252 - -
Cca08g00547 634 SMART serkin_6 86 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00547 634 PANTHER OS07G0586332 PROTEIN 316 634 IPR044576 -
Cca08g00547 634 PANTHER OS07G0586332 PROTEIN 1 306 IPR044576 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00547 Cca-Chr8 8870683 8873266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00547 489 611 Receptor kinase-like Gene Family AT2G43700 33.871 7.08e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Cca08g00547 Pkinase 2.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00547 - - gsj:114390604 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00547 08 8870683 8873266 Cca08g00547 08 8870683 8873266 ECH
Cca08g00547 08 8870683 8873266 Cca02g02322 02 43960482 43962305 PCT