Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00544 ATGGCTTCCCTTAAGATTCCCTTGTTCTTTATCCTTGTTAGCTTCCTCAGTTTTGCAACTACTCAGGCACAGTATGACTCCACACCTCTCTACATATACCAAAATTGCTCAGGGGGCAACAGTACCGATGGCAGCGCCTTCCTattaaacctcagaacccttctttcttccttatcatctaaggcctccagtaccgacactggattctacaacaccacagttcatggagaaaacccctcagactcggtctttggattgtttatgtgtaggggtgatgtctctcctcagctttgtcaaagatgtgtccaagatgcaaccaagcgactatccacagagtgctccttgtccaaacaagctgtcatttggtacgacgagtgcactcttcgttattccaaccgctcattcttctccaccttcgacaccaggcctagagttgccctcttgaacactgccaatgtctcaaaccaagaaagcttcatgcgtttgttgtttcacaccataaacaaaactgcAGATGAAGCAGCTCGTGGCAATCGTAGGAAGTATGCCACAATGCAAACAAACATGTCTGGATTTCAGATTCTTTATTGTCTAGCTCAGTGCACACCGGACCTGTCACCCCAAGATTGCAGAAGCTGTCTTAGTGGAGTAATAGGGGACCTTCCATGGTGCTGCCAAGGGAAGACAGGTGGGAGAGTTCTATATCCCAGTTGTAATGTCAGGTATGAATTTTACCCTTTCTATCGCTCCACAAATATGCCAACACAAGCACAGGTTCCTGCGTCAAATTTTCCCAATGCAGATTCACGTTTTTCGGAAGATCCAACTTATTTAAACCACAGTTGCTCAACTAATGTAACTGCTGACACTTCTTTCAAAATATATCTCAAGACCCTTCTCTCTTACATGTCTTCCAATGCCACCAATGGCAACGAATATAAGGGTAGTGTGGAGgacactgtgtatggcctcttcatgtgccgtggtgaccttccctcacgcctctgtcaacaatgcgtcctcaacgcaacacaccaaatatccgcactgtgtgactcatttcaagaggctatcatttggtacagccactgcatgcttcgctattcctatcgctacttcttctccaaaatggaaacaagtccaACTTTTCAAATCTTGAATGTTACCGATACCTCAGATTCAATACCGGAGCAAGAGTTCTTCACTTATACATTATCAACTATGTTGGCTAATCTGGCAAAGGAGATACGGGATAGTAATGAGAGATACGAGATTAAATCATCAAAGTTGAATGATTTACAAACCCTTTACACTCTTAGCCAATGTACGAAGGATTTGTCTAGCGATGATTGTATGGGTTGTCTGCAAGATATAATTGGAACAATCCCATGGTCTCGCTTGGGAAGCGTCGGTGGAAGAGTTCTATATCCGAGTTGCAATCTCAGGTTTGAATTGTCCCCATTTTACAGGGTCGATGATGAAGCTCCATCTCTAACGCCGGCTAATCTTTCTCCATCAGAAAAAAGAAAAGACCAATCGCGAATAATGATCTTGATTATTATACTAACAATTGTTTCGGTGGTACTCTTCTCTTTTGGCTACTATTTGATAAAGAGAAAAGCAAGAAAGAGGGTTAATACTGTGATCCTTAGAGAAAATTTTGGCCATGAAAGTGCTACTTTAGAGCCACTACAATTCAATTTGGTTGTAATTGAAGCCGCAACCAACAACTTTTCAAATGATAATAGGATCGGTAAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTTCTTGATGGACGACAAATAGCAGTAAAAAGACTCTCAAAAAGCTCTAAGCAAGGCATAAATGAGTTCAAAAATGAAGTTTTATTGATAGCGAAGCTTCAACATAGAAATCTTGTGGCATTCGTCGGCTTTTGTCTTGATGAACAACACCAAATACTTATTTATGAATATGTCCCAAACAAGAGTCTTGACTATTTTTTATTTGGTTTGACACTTGCCACTTTTATACTCAATTCTTTAATGTTatgcattcatgcattgcatacatacatacatacatatatGTGTGTTTTAAATTCATACATTAATTGCATGTGTATATGCATGTGTATCCCTTGTAGCTTATAG 2136 0.2842 MASLKIPLFFILVSFLSFATTQAQYDSTPLYIYQNCSGGNSTDGSAFLLNLRTLLSSLSSKASSTDTGFYNTTVHGENPSDSVFGLFMCRGDVSPQLCQRCVQDATKRLSTECSLSKQAVIWYDECTLRYSNRSFFSTFDTRPRVALLNTANVSNQESFMRLLFHTINKTADEAARGNRRKYATMQTNMSGFQILYCLAQCTPDLSPQDCRSCLSGVIGDLPWCCQGKTGGRVLYPSCNVRYEFYPFYRSTNMPTQAQVPASNFPNADSRFSEDPTYLNHSCSTNVTADTSFKIYLKTLLSYMSSNATNGNEYKGSVEDTVYGLFMCRGDLPSRLCQQCVLNATHQISALCDSFQEAIIWYSHCMLRYSYRYFFSKMETSPTFQILNVTDTSDSIPEQEFFTYTLSTMLANLAKEIRDSNERYEIKSSKLNDLQTLYTLSQCTKDLSSDDCMGCLQDIIGTIPWSRLGSVGGRVLYPSCNLRFELSPFYRVDDEAPSLTPANLSPSEKRKDQSRIMILIIILTIVSVVLFSFGYYLIKRKARKRVNTVILRENFGHESATLEPLQFNLVVIEAATNNFSNDNRIGKGGFGEVYKGILLDGRQIAVKRLSKSSKQGINEFKNEVLLIAKLQHRNLVAFVGFCLDEQHQILIYEYVPNKSLDYFLFGLTLATFILNSLMLCIHALHTYIHTYMCVLNSYINCMCICMCIPCSL 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00544 711 ProSiteProfiles Gnk2-homologous domain profile. 141 247 IPR002902 -
Cca08g00544 711 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 22 256 - -
Cca08g00544 711 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 504 671 - -
Cca08g00544 711 SUPERFAMILY Protein kinase-like (PK-like) 559 686 IPR011009 -
Cca08g00544 711 ProSiteProfiles Gnk2-homologous domain profile. 29 135 IPR002902 -
Cca08g00544 711 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 268 492 - -
Cca08g00544 711 ProSiteProfiles Gnk2-homologous domain profile. 274 373 IPR002902 -
Cca08g00544 711 Gene3D Phosphorylase Kinase; domain 1 539 653 - -
Cca08g00544 711 ProSiteProfiles Protein kinase domain profile. 578 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00544 711 Pfam Salt stress response/antifungal 154 244 IPR002902 -
Cca08g00544 711 Pfam Salt stress response/antifungal 36 132 IPR002902 -
Cca08g00544 711 Pfam Salt stress response/antifungal 396 484 IPR002902 -
Cca08g00544 711 Pfam Salt stress response/antifungal 282 369 IPR002902 -
Cca08g00544 711 Pfam Protein kinase domain 579 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00544 711 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 22 256 - -
Cca08g00544 711 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 504 671 - -
Cca08g00544 711 ProSiteProfiles Gnk2-homologous domain profile. 383 488 IPR002902 -
Cca08g00544 711 Gene3D - 143 247 IPR038408 -
Cca08g00544 711 Gene3D - 275 373 IPR038408 -
Cca08g00544 711 Gene3D - 383 488 IPR038408 -
Cca08g00544 711 Gene3D - 28 135 IPR038408 -
Cca08g00544 711 ProSitePatterns Protein kinases ATP-binding region signature. 584 606 IPR017441 GO:0005524
Cca08g00544 711 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 268 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00544 Cca-Chr8 8831265 8837691 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00544 272 664 Receptor kinase-like Gene Family AT4G05200 38.756 7.14e-87 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca08g00544 Pkinase 9e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00544 - - gmx:100798426 937.947