Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00539 ATGCGCAGGGGTGATGTCCCTCGTGAGCTCTGTCAACAATGTGTCCAAGATGCAACCCAGCGACTATCAACAAAGTGCTCCTTGTCCAAAGAAGCTGTGATTTGGATCGATGAGTGCATGGTTCGCTTTTCCAACCGTTCATTTTTTTCCACCTTCGACACTAGACCTAAACTTCACGTATACAATGAGGTGAATGCCTCAGACCAGGAAACGTTCATGCGTTTAGTGTTTGACAACTTAAACAAAACTGCACACGAAGCAGCTCGTGGTAATAGTAACAAGAAGTATGCGACATTGCAAACAGACATATCTAAATCTCAGAGCCTTTACTGTCAAGCTCAGTGCACACCGGACCTGTCGCCTTATGATTGCAGAAGATGTCTCAGTTTAGCGATAGGGGAACTTCCACGTCAAGGGTCGCTAGGGATAGTTCTATATCCCAGCTGTAATGTTAGGTATGGAGTGAACCCTTTCTACCGCTCATCTATCCCTACACCAGTGCCGGTTCCTGCATCAAAGTTTCCCAATGCAGATCAACAATTTTCAGAAGATCCCACTTATCTATACCACAATTGCACCACTAATGCAACTGCTGACAGCACTTACAAAAGGCATCTCAACACCCTCCTCTTTTACTTGTCTTCCAATGCTACCGATGGCAATAAATTTTCTAAGAATAATGTGGAGGACAGTGTGTATGGCCTCTTCATGTGCCGCGGTGACCTTCCCTCACGCCTCTGTCAACAATGCGTTCTCAACGCAACACACCAAATATCCGCATCGTGTAACTCATCTGAAGAGGCTATCATATGGTACAGCCACTGCATGCTTCGCTATTCCTATCAGAATTTCTTCTATCAAGTGGAGGAAACTCCAGCATTTCAAATGCTGAATGTTACCACTATCTCCAACCCCATCCCGGGACAAGAGTCCTTCACTTTTACATTATCAAATACATTAGCTGATCTGGCGAACGCGGCATCAGATAGTAGCGAGAGATATGTGATTAAATCATCAAAACTGAATGATGTACAGACCCTTTATACTCTTGGTCAATGTACACAGGATTTGCCTACCGATGATTGTGGGAACTGTCTGGAAGATATAATTGGAAAAATTCCATGGTCACACTTGGGAAGCATAGGGGGGAGAGTTTTATGTCCGAGTTGCAATCTCAGGTTTGAATCGTTCCAATTTTACGGGATTGGTGACGAAGCGCAATCGCCGAGGCCGGGTAATCTTTCTCCATCAGTCCACAAAGAGAAAAGAAAAAGTGGATCGCGAGCAATGATCTTAATTATTGTACTCACAACTATTTCAGCGGTACTTTTCTCTTTTGGCTACTATTTAATAAAGAGAAAAGTAAGAAAAAGTGCTAAGACTGTTTTGAGAGAAAATTTTGGTCATGAAAGTGCCACTTTAGAGCCACTACAATTCACTTTGGATGTAATTGAAGCAGCAACCAATAACTTTTCGAATGATAATAAGATTGGAAAAGGTGGATTTGGAGAAGTTTACAAGGGAGTTCTTCTTGATGGACGACAAATAGCAGTAAAGAGACTCTCAAAAAGTTCTAAGCAAGGCACAATTGAGTTCAAGAATGAGGTTTTATTGATAGCCAAACTTCAACACAGAAATCTTGTGGCATTCATCGGCTTTTGTCTTGAACAACAAGACAAAATACTTATTTACGAATACGTTCCAAACAAGAGTCTTGACTATTTTTTATTTGGTTTGACACTTGCCACCCTTAAACAACATAATTCTTTAATGTTTAAATTCATCCATTACATACACGTGTGTGTTTAA 1809 0.4146 MRRGDVPRELCQQCVQDATQRLSTKCSLSKEAVIWIDECMVRFSNRSFFSTFDTRPKLHVYNEVNASDQETFMRLVFDNLNKTAHEAARGNSNKKYATLQTDISKSQSLYCQAQCTPDLSPYDCRRCLSLAIGELPRQGSLGIVLYPSCNVRYGVNPFYRSSIPTPVPVPASKFPNADQQFSEDPTYLYHNCTTNATADSTYKRHLNTLLFYLSSNATDGNKFSKNNVEDSVYGLFMCRGDLPSRLCQQCVLNATHQISASCNSSEEAIIWYSHCMLRYSYQNFFYQVEETPAFQMLNVTTISNPIPGQESFTFTLSNTLADLANAASDSSERYVIKSSKLNDVQTLYTLGQCTQDLPTDDCGNCLEDIIGKIPWSHLGSIGGRVLCPSCNLRFESFQFYGIGDEAQSPRPGNLSPSVHKEKRKSGSRAMILIIVLTTISAVLFSFGYYLIKRKVRKSAKTVLRENFGHESATLEPLQFTLDVIEAATNNFSNDNKIGKGGFGEVYKGVLLDGRQIAVKRLSKSSKQGTIEFKNEVLLIAKLQHRNLVAFIGFCLEQQDKILIYEYVPNKSLDYFLFGLTLATLKQHNSLMFKFIHYIHVCV 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00539 602 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 419 582 - -
Cca08g00539 602 ProSiteProfiles Gnk2-homologous domain profile. 1 48 IPR002902 -
Cca08g00539 602 Gene3D - 55 158 IPR038408 -
Cca08g00539 602 Gene3D - 1 48 IPR038408 -
Cca08g00539 602 Gene3D - 293 399 IPR038408 -
Cca08g00539 602 Gene3D - 184 284 IPR038408 -
Cca08g00539 602 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 168 - -
Cca08g00539 602 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 179 404 - -
Cca08g00539 602 Gene3D Phosphorylase Kinase; domain 1 452 566 - -
Cca08g00539 602 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 1 168 - -
Cca08g00539 602 Pfam Protein kinase domain 492 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00539 602 ProSiteProfiles Gnk2-homologous domain profile. 184 284 IPR002902 -
Cca08g00539 602 ProSiteProfiles Gnk2-homologous domain profile. 54 158 IPR002902 -
Cca08g00539 602 ProSiteProfiles Protein kinase domain profile. 491 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00539 602 ProSitePatterns Protein kinases ATP-binding region signature. 497 519 IPR017441 GO:0005524
Cca08g00539 602 SMART tyrkin_6 491 602 IPR020635 GO:0004713|GO:0006468
Cca08g00539 602 ProSiteProfiles Gnk2-homologous domain profile. 294 399 IPR002902 -
Cca08g00539 602 SUPERFAMILY Protein kinase-like (PK-like) 469 582 IPR011009 -
Cca08g00539 602 Pfam Salt stress response/antifungal 192 280 IPR002902 -
Cca08g00539 602 Pfam Salt stress response/antifungal 308 395 IPR002902 -
Cca08g00539 602 Pfam Salt stress response/antifungal 3 45 IPR002902 -
Cca08g00539 602 Pfam Salt stress response/antifungal 67 154 IPR002902 -
Cca08g00539 602 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 179 404 - -
Cca08g00539 602 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 419 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00539 Cca-Chr8 8781553 8789512 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00539 179 577 Receptor kinase-like Gene Family AT4G05200 40.047 1.10e-87 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca08g00539 Pkinase 2.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00539 - - ccaj:114914910 862.062