Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00536 ATGCCGTCCCTCGTTCCGCTCCCCAACGACGCCGTTCCGAGCAAGTCCCCAaaggacaagacaaagaagaaagagaagaagaacaagaGCGACGCCGTTTCGGAGTCGAAGAAGCGCAAGAAGCGTTGGGGCGATGAAGAGGAGGAGGAGCCGCAGAGGAGCGAGACCAGCTCCGAGCTGGTGGAGCCCGCCGACGAGGGTTTGAAATCGGTTAAGAAGAAGGCGAAGAAGGTTGCGGTGGAGGATGAAGAAGAAGTTGCCAAGGGTGAGGATCCGAACTCGGTTTCCAATTTCAGGATTTCGGATCCCTTGAGGGAGAAGCTGAAGCAGAATGGGATCGAGTCGCTGTTCCCCATTCAGGCCATGACCTTCGACACCATTCTTGATGGTTCCGATTTGGTTGGTCGCGCTCGCACCGGTCAGGGTAAAACTCTGGCTTTTGTCTTGCCCATATTAGTGTCTTTGACAAATGGCCCAGCTAAAGCTGCAAGAAAGACAGGTTATTCAAGGCCTCCAAGTGTCCTTGTGCTTTTGCCTACTAGGGAATTGGCCAATCAGGTTTATGCTGATTTTGAAGTTTATGGCTCCGTGATGGGATTGAGTTCTTGCTGTTTATATGGTGGGACGCCATATTACAATCAAGAGGTTAATCTTCGAAGAGGTGTTGATATTGTTATTGGAACACCTGGTCGTGTAAAGGATCATATAGAGAGGGGTAACCTTGACCTAAGCCATCTAAGGTTCCGTGTCCTTGACGAGGCAGATGAGATGCTGAGGATGGGCTTTGTTGAAGATGTTGAACTCATTCTAGGTAATGTGAAGGATGTTGCTAAAGTTCAGACACTTCTTTTTAGTGCCACTTTGCCAGCCTGGGTTAAGCAAATTTCTGCGAAGTTTCTGAAACCAGAAAAGATTACTGCTGATCTCGTTGGGAATGAGAAAATGAAGGCTAGCGCCAATGTTAGGCATATTGTTCTTCCATGTCTCAGTTCTAGCTTGTCCCAGCTTATACCTGACATTATTCGTTGTTATAGCAGTGGAGGCCGGACAATTGTATTTACTGAAAAAAAGGAGACAGCCTCTGAGCTTGCAGGGTTGTTGACTGGAGCAAGGGCTCTCCATGGTGACATACAACAGTCCCGACGGGAGGTTACACTGTCAGCTTTTAGATCTGGGAAATTCATGACATTGGTGGCCACAAATGTGGCTGCTAGAGGTCTGGATATTAATGATGTTCAATTGATTATCCAGTGTGAGCCTCCACGGGACGTAGAAGCCTATATCCATCGATCTGGGCGCACAGGAAGAGCTGGTAATACTGGAGTTGCTGTAATGCTTTATGATCCCAGACAATCGTTTAAAATATCTAAAATAGAAAGGGAATCAGGTGTGAAATTTGAACGCCTATCTGCCCCTCAGCCTGGTGATTTTGCCAAAGCTGCTGGTGAGAAAGCTGTTGCAGAAGTGCTTAACCAAGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTGCTGCTGAGGAGCTTTTGAACAAATCTGGTTTATCAGCTGTTGAGTTACTAGCAAAAGCTCTTGCCAAGGCTTCTGGTTTTACTGAATTTAAGAAAAGATCACTTCTGGCTTCCAGGGAGAATTATGTTACCGTTCTTTTTAAGATGGGAAGACCTATGTTTTCCCCAATGCATACACTTGGACTCCTGAAGAAATTCTTGCCCGAGGAGAAGGTTGGGGCAGTGCAAGGTCTTAATTTCACTGCAGATAAAAATGGTGCCGTTTTTGATGTACCGGCCGAAGATTTAGATGCATTTGTTGCAGGTGTGCAGAGTGACCCTAGTTTAAGCCTAGAGGTGCTGAAAGCATTGCCACCTTTGGAGGAAAGAGGCGATTCCAGATTTGGTGGTGGTCGCTGGAATAATAATGGTAGAGGTGGCGGGAATAGATTCTCCCGTGGCAGGGGTGGTGGATTTTCTGGTGGGAATAATAGGTCTTCAAAAGGTTTTAGAGGTGGTAGAGGTAATGGTGGAAGGAGTTGGTGA 2034 0.4617 MPSLVPLPNDAVPSKSPKDKTKKKEKKNKSDAVSESKKRKKRWGDEEEEEPQRSETSSELVEPADEGLKSVKKKAKKVAVEDEEEVAKGEDPNSVSNFRISDPLREKLKQNGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILVSLTNGPAKAARKTGYSRPPSVLVLLPTRELANQVYADFEVYGSVMGLSSCCLYGGTPYYNQEVNLRRGVDIVIGTPGRVKDHIERGNLDLSHLRFRVLDEADEMLRMGFVEDVELILGNVKDVAKVQTLLFSATLPAWVKQISAKFLKPEKITADLVGNEKMKASANVRHIVLPCLSSSLSQLIPDIIRCYSSGGRTIVFTEKKETASELAGLLTGARALHGDIQQSRREVTLSAFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRQSFKISKIERESGVKFERLSAPQPGDFAKAAGEKAVAEVLNQVSDSVIPAFKSAAEELLNKSGLSAVELLAKALAKASGFTEFKKRSLLASRENYVTVLFKMGRPMFSPMHTLGLLKKFLPEEKVGAVQGLNFTADKNGAVFDVPAEDLDAFVAGVQSDPSLSLEVLKALPPLEERGDSRFGGGRWNNNGRGGGNRFSRGRGGGFSGGNNRSSKGFRGGRGNGGRSW 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00536 677 CDD SF2_C_DEAD 321 447 - -
Cca08g00536 677 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 306 IPR014001 -
Cca08g00536 677 Pfam Helicase conserved C-terminal domain 340 438 IPR001650 -
Cca08g00536 677 SMART helicmild6 357 438 IPR001650 -
Cca08g00536 677 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 23 653 - -
Cca08g00536 677 SUPERFAMILY RNA-binding domain, RBD 533 616 IPR035979 GO:0003676
Cca08g00536 677 Gene3D - 320 547 IPR027417 -
Cca08g00536 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 456 IPR027417 -
Cca08g00536 677 Gene3D - 52 307 IPR027417 -
Cca08g00536 677 CDD GUCT_RH7_like 536 621 - -
Cca08g00536 677 Pfam GUCT (NUC152) domain 529 624 IPR012562 GO:0003723|GO:0004386|GO:0005524
Cca08g00536 677 CDD DEADc 104 306 - -
Cca08g00536 677 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 250 258 IPR000629 -
Cca08g00536 677 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 23 653 - -
Cca08g00536 677 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 335 478 IPR001650 -
Cca08g00536 677 MobiDBLite consensus disorder prediction 15 84 - -
Cca08g00536 677 Pfam DEAD/DEAH box helicase 117 294 IPR011545 GO:0003676|GO:0005524
Cca08g00536 677 MobiDBLite consensus disorder prediction 628 677 - -
Cca08g00536 677 MobiDBLite consensus disorder prediction 1 98 - -
Cca08g00536 677 Gene3D - 548 618 - -
Cca08g00536 677 SMART ultradead3 112 324 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00536 Cca-Chr8 8727872 8734043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00536 130 469 Eukaryotic Initiation Factors Gene Family AT1G72730 30.857 1.93e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00536 K16911 - jre:108998595 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00536 08 8727872 8734043 Cca08g00536 08 8727872 8734043 ECH