Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00535 ATGACGAAACAGGTTCTTCTTTTGTTCTGCTTCGCCTCTGCACTCAAACTTTCAGCTTCAGAGTCCATATCTGCTTCTGTGCAGCCTCACGCAGCTGAATCCTTCTCTGCTGGCTATATTCAGATGAAGACTGCAGCGAACTGTTCTTACCTGGTAGTTGTTTCTACAAGCTGTTCATCGCCCAAGTTCACGACGGATAAGATCAGTATTGCGTTTGGAGATGCTTATGGCAACGAGGTATATGAACCAAGACTTGATGACCCAATTTCAAGGACTTTTGAGCAGTGCTCATCTGATACATTTCAGATAGATGGTGCATGTGCATCCCCCATTTGCTTTTTGTACCTATACAGATCAGGGGCAGAGGAATATGGTTGGAAGCCTGAGAGTGTCAAAATCTTTGGCTACAACTCAGAGCCTATTACTTTTGATTTCAACACCTCCATCCCCAATGGCACCTGGTTTGGCTATAATCTGTGCCAGActcttcctcctcctcctcctccttcttcttcttcATACCAACTATACCCTCACAAATGGCTCATCATGAGTTTGGTTGTAGCCTTTGTTCTTAGCTTCTGGCTGTAA 591 0.4179 MTKQVLLLFCFASALKLSASESISASVQPHAAESFSAGYIQMKTAANCSYLVVVSTSCSSPKFTTDKISIAFGDAYGNEVYEPRLDDPISRTFEQCSSDTFQIDGACASPICFLYLYRSGAEEYGWKPESVKIFGYNSEPITFDFNTSIPNGTWFGYNLCQTLPPPPPPSSSSYQLYPHKWLIMSLVVAFVLSFWL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00535 196 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 46 157 IPR036392 GO:0005515
Cca08g00535 196 PANTHER EMBRYO-SPECIFIC PROTEIN 2 196 - -
Cca08g00535 196 Pfam Embryo-specific protein 3, (ATS3) 41 160 IPR010417 -
Cca08g00535 196 Gene3D PLAT/LH2 domain 48 156 - -
Cca08g00535 196 PANTHER - 2 196 - -
Cca08g00535 196 CDD PLAT 48 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00535 Cca-Chr8 8708185 8710775 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00535 - - gmx:100499779 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00535 08 8708185 8710775 Cca08g00535 08 8708185 8710775 ECH
Cca02g02361 02 44477308 44478931 Cca08g00535 08 8708185 8710775 PCT