Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00530 ATGGAAGAGGGTGTGCAGAGAAACCTCTTTCTGTTCCTTGTTCTGCCAATGGAGCTCCTGCTGCTTCTCTCTTCTTTTGCTTTGCCTCTCAGTGATGAAGGACAAGCATTGATGAAGATTAAGGCTTCATTCAGCGATGTAGCAGATGTTCTGCATGATTGGGATGATTTGCAGAATGATGATTTCTGTTCTTGGCACGGAGTCTTGTGTGGCAATGTCAGCCTTACAGTGCTTTCTCTGAATTTGTCCAGCTTGAACCTTGGTGGGGAGATATCGCCTGCCATCGGTGACTTAGTAAACTTGCAATCCATAGACCTGCAGGGTAATAAACTAACTGGTCAAATTCCAGATGAAATTGGGAACTGTGCTGCTCTTGTTCATCTGGATTTGTCTGATAATCAGCTATACGGTGATATACCTTTCTCCATATCAAAGCTAAAGCAGCTTGTGTTTTTGAATTTAAAAAGTAATCAGTTGACTGGTCCTATCCCCTCAATTTTAACCCAACTTCCAAACTTGAAGACTCTTGATCTTGCACGAAATAGACTCGCAGGTGAGATTCCAAGACTACTCTATTGGAATGAAGTTCTGCAGTACCTTGGGTTGCGAGGGAACATGTTGAGTGGAACTCTGTCCCCTGATATCTGTCAATTAACCGGTTTGTGGTATTTTGATGTGAGGGGCAATAATCTGACTGGCACCATACCTGATAGCATTGGAAACTGTACAAATTTTGAAATCTTGGATCTATCATATAATCAGATTTCTGGGGAAATTCCCTATAATATTGGGTTTCTCCAAGTAGCTACTTTGTCACTTCAAGGAAACAGACTAACAGGGAAAATTCCGGAAGTCATTGGTTTAATGCAAGCCCTTGCCATTTTGGATTTGAGTGAGAATGAGCTGGTAGGACCTATCCCTCCCATACTAGGCAATTTGACTTTTACTGGCAAGCTGTACCTTCATGGAAACATGATTACTGGACCAATACCCCCGGAACTTGGTAATATGTCAAGACTAAGCTACCTGCAATTGAATGACAATCAGTTAGTTGGCAAAATTCCAGATGAACTCGGGAAGCTTGAAAATTTGTTTGAATTGAATCTTGCCAATAATCATCTTGAAGGATCTATTCCACTTAACCTTAGCTCCTGTACTGCCTTGAATAAGTTTAATGTGCATGGTAATCATTTAAGTGGTTCAATTCCTTTGAGCTTTCGCAGCCTTGAGAGCTTGACTTTCTTAAATCTTTCTGCAAACAACTTCAAAGGGAGTATACCTGCTGAATTGGGCCATATAATAAATCTTGATACACTGGATCTGTCTAGCAATAACTTTTCAGGGCATGTTCCAGGATCTGTTGGTTATCTTGAGCATCTTCTGACCTTGAACCTGAGCCATAATAGTTTTCAGGGGCCCTTGCCTGCTGAATTTGGGAACCTTAAAAGCATACAGACTATTGATATGTCATTCAACTATCTGTCTGGTAGCATACCCCCAGACATTGGTCAGCTGCAGAATCTTGTGTCTCTGATCTTGAACAACAATGATTTGCATGGGAAGATTCCAGATCAGCTTGCCAACTGCTTAAGTCTTAACTCCCTGAATGTCTCGTACAATAACTTATCTGGTGTCATTCCTCCTATGAAGAACTTCTCACGGTTTTCTTCTGACAGCTTCATTGGAAATCCATTATTATGTGGGAATTGGTTAGGATCAATATGTGATCCTTACCTGCCAAAATCCAGAGTGGTTTTTTCAAAGGCTGCAGTTGTTTGTCTCGTTGTTGGTAGCATCACATTATTGGCCATGGTAATTATTGCTATCTACAGATCAAGCCAATCAATGCAATTGATTAAAGGATCTAGTGGAAATGGCAGCGGGCCGCCCAAGCTTGTAGTTCTTCATATGGGTTTGGCCATTCACACCCTTGATGATATTATGAGAGTGACTGAAAATCTCAATGAGAAGTATATCATAGGGTATGGTGCCTCAAGCACTGTATACAAGTGTGTTTTGAAGAATTCCCGGCCAATTGCTATTAAACGACTATACAACCAGCATGCTCACAACTCAAGGGAGTTTGAGACAGAACTTGAAACTATTGGCAGTATCAGACACAGGAATCTTGTCACTTTGCATGGTTATGCTCTAACTCCTAATGGAAATCTTCTTTTCTATGACTATATGGAGAATGGCTCTTTGTGGGATCTTCTTCATGGTCCCTTGAAAAAGGTAAAACTTGATTGGGAGACACGCTTGAGGATTGCTGTGGGAGCTGCTGAAGGACTTGCTTACCTCCATCATGATTGCGATCCTCGAATCATTCATAGGGATATCAAGTCATCAAATATTCTGCTAGATGAGAACTTTGAGGCTCGTCTCTCTGATTTTGGCATTGCCAAATGTCTGTCAACTACAAGAACACATGCATCAACCTTTGTTCTTGGAACAATAGGCTACATTGACCCTGAGTACGCCCGGACATCTAGGCTGAATGAAAAATCCGATGTGTATAGCTTTGGCATTGTTCTACTTGAGCTACTAACTGGGAAGAAAGCAGTGGATAATGATTGTAACTTGCATTACTTGATATTGTCCAAGGCAGATAACAACACTATAATGGAGACAGTGGATCCTGAGGTGTCCATTACCTGCATGGATCTGGCTCATGTTAAGAAGACCTTTCAGCTTGCTCTTCTTTGCACAAAAACAAATCCTTCTGAGAGGCCTACCATGCATGAGGTTGCCAGGGTTTTGGCATCACTACTCCCAGCATCTCCCACCAACATCTTTGCCCCTCCTTCAAAGACCATTGATTATGCACAATTTATGATACAAAAGGGAAACCACCCTCAAATGAACACGCCACAACCTCAGCAGAAGTACTCAAATGATCAATGGTTTGTTCGCTTTGAGGATGTTGTATCAAATAACAGCCTCTAG 2946 0.4158 MEEGVQRNLFLFLVLPMELLLLLSSFALPLSDEGQALMKIKASFSDVADVLHDWDDLQNDDFCSWHGVLCGNVSLTVLSLNLSSLNLGGEISPAIGDLVNLQSIDLQGNKLTGQIPDEIGNCAALVHLDLSDNQLYGDIPFSISKLKQLVFLNLKSNQLTGPIPSILTQLPNLKTLDLARNRLAGEIPRLLYWNEVLQYLGLRGNMLSGTLSPDICQLTGLWYFDVRGNNLTGTIPDSIGNCTNFEILDLSYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAILDLSENELVGPIPPILGNLTFTGKLYLHGNMITGPIPPELGNMSRLSYLQLNDNQLVGKIPDELGKLENLFELNLANNHLEGSIPLNLSSCTALNKFNVHGNHLSGSIPLSFRSLESLTFLNLSANNFKGSIPAELGHIINLDTLDLSSNNFSGHVPGSVGYLEHLLTLNLSHNSFQGPLPAEFGNLKSIQTIDMSFNYLSGSIPPDIGQLQNLVSLILNNNDLHGKIPDQLANCLSLNSLNVSYNNLSGVIPPMKNFSRFSSDSFIGNPLLCGNWLGSICDPYLPKSRVVFSKAAVVCLVVGSITLLAMVIIAIYRSSQSMQLIKGSSGNGSGPPKLVVLHMGLAIHTLDDIMRVTENLNEKYIIGYGASSTVYKCVLKNSRPIAIKRLYNQHAHNSREFETELETIGSIRHRNLVTLHGYALTPNGNLLFYDYMENGSLWDLLHGPLKKVKLDWETRLRIAVGAAEGLAYLHHDCDPRIIHRDIKSSNILLDENFEARLSDFGIAKCLSTTRTHASTFVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNDCNLHYLILSKADNNTIMETVDPEVSITCMDLAHVKKTFQLALLCTKTNPSERPTMHEVARVLASLLPASPTNIFAPPSKTIDYAQFMIQKGNHPQMNTPQPQQKYSNDQWFVRFEDVVSNNSL 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00530 981 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 21 956 - -
Cca08g00530 981 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 21 956 - -
Cca08g00530 981 Gene3D Ribonuclease Inhibitor 194 269 IPR032675 -
Cca08g00530 981 Pfam Leucine rich repeat 100 159 IPR001611 GO:0005515
Cca08g00530 981 Pfam Leucine rich repeat 435 494 IPR001611 GO:0005515
Cca08g00530 981 SMART LRR_typ_2 289 317 IPR003591 -
Cca08g00530 981 SMART LRR_typ_2 409 433 IPR003591 -
Cca08g00530 981 SMART LRR_typ_2 170 194 IPR003591 -
Cca08g00530 981 SMART LRR_typ_2 361 385 IPR003591 -
Cca08g00530 981 SMART LRR_typ_2 218 242 IPR003591 -
Cca08g00530 981 SMART LRR_typ_2 505 529 IPR003591 -
Cca08g00530 981 SMART LRR_typ_2 98 122 IPR003591 -
Cca08g00530 981 SMART LRR_typ_2 457 480 IPR003591 -
Cca08g00530 981 Gene3D Phosphorylase Kinase; domain 1 630 729 - -
Cca08g00530 981 SMART serkin_6 654 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00530 981 Gene3D Ribonuclease Inhibitor 270 578 IPR032675 -
Cca08g00530 981 SUPERFAMILY RNI-like 269 355 - -
Cca08g00530 981 SUPERFAMILY Protein kinase-like (PK-like) 632 920 IPR011009 -
Cca08g00530 981 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Cca08g00530 981 ProSitePatterns Serine/Threonine protein kinases active-site signature. 775 787 IPR008271 GO:0004672|GO:0006468
Cca08g00530 981 Gene3D Ribonuclease Inhibitor 30 193 IPR032675 -
Cca08g00530 981 ProSitePatterns Protein kinases ATP-binding region signature. 660 682 IPR017441 GO:0005524
Cca08g00530 981 Pfam Protein kinase domain 656 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00530 981 ProSiteProfiles Protein kinase domain profile. 654 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00530 981 Pfam Leucine Rich repeat 241 258 IPR001611 GO:0005515
Cca08g00530 981 SUPERFAMILY RNI-like 103 550 - -
Cca08g00530 981 Gene3D Transferase(Phosphotransferase) domain 1 730 931 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00530 Cca-Chr8 8627104 8635294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00530 99 981 Receptor kinase-like Gene Family AT5G07180 75.761 0.0 1353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Cca08g00530 Pkinase 9.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00530 K20718 - gmx:100800185 1699.1