Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00519 ATGGAGGAAAGAGAAATTTTTAGTTCTGGCCATGTGGTTAAGGTTGTCGAGGCCCCCCAGAGCTTCCACGTGGCACTAAACTCAGTGCAGTTTCCCGGGCCCACAGTGGAGTcgccggtgcctgctcctgcgccggcgagtgctccGGTGGTGACTTCCGGTAGTACGGATGGGAAGAAGAAGAGGGGCAGGCCTAGGAAGTATGGACCAGACGGCAAGCTGGCGCTGTCGCCGATGCCGATATCGGCATCGATTCCGTTGACCGGAGACTTTTCATCCTGGAAAAGGGGTAGAGGAAAGCCGTACGAGTCAATCAAGAAGTCTTTCAAGTTTTATGAAGTTGAAGGTCAAGGTGCAGGACCAGGTGATGGAATTGCATACTCCGTAGGTGCCAATTTCACACCTCACATCCTTACAGTAAATGCTGGCGAGGATGTTACTATGAAGATTATGTCCTTCTCTCAACAAGGATGTCGAGCCATTTGCATTCTCTCTGCAAATGGCACAATTTCAAATGTCACACTACGCCAACCATCTTCTTCTGGTGGTACTTTAACATACGAGGGGCGGTTTGAAATTCTTTCCTTGACTGGTTCATATATGCCAACTGAGAATGGATTCACAAGGAGCAGATCTGGTGGGATGAGCATCTCTTTGGCCAGTCCTGATGGTCGAGTAATGGGGGGTGGACTTGCTGGTTTGCTGGTAGCTGCAGGTCCAGTGCAGGTTGTTGTGGCTAGTTTTCTTCCTGGTCACCAGCTGGAGCAGAAACCAAAGAAGCCGAGGGTGGAGCCAATATCAATGGTTGCCCCTACACATGTCAATCCTACTTCTGCTGAAGAAATAAGAATTGGTACTGGAGGAGTAAAGCCAATCATGACACCAACTGCGTTTCAAGTGGAAAACCTTTTTAGCAATGGTCAAGGCTCTAGGAGCTCACCTTCTGATGATGAAACTTCTTTCCCTGAAAATGAGTCTAACCCCAGCCATGCAGATGCTGGAGTTGTATGCTAA 1014 0.4675 MEEREIFSSGHVVKVVEAPQSFHVALNSVQFPGPTVESPVPAPAPASAPVVTSGSTDGKKKRGRPRKYGPDGKLALSPMPISASIPLTGDFSSWKRGRGKPYESIKKSFKFYEVEGQGAGPGDGIAYSVGANFTPHILTVNAGEDVTMKIMSFSQQGCRAICILSANGTISNVTLRQPSSSGGTLTYEGRFEILSLTGSYMPTENGFTRSRSGGMSISLASPDGRVMGGGLAGLLVAAGPVQVVVASFLPGHQLEQKPKKPRVEPISMVAPTHVNPTSAEEIRIGTGGVKPIMTPTAFQVENLFSNGQGSRSSPSDDETSFPENESNPSHADAGVVC 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00519 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 135 248 IPR005175 -
Cca08g00519 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 255 - -
Cca08g00519 337 MobiDBLite consensus disorder prediction 304 327 - -
Cca08g00519 337 ProSiteProfiles PPC domain profile profile. 130 272 IPR005175 -
Cca08g00519 337 MobiDBLite consensus disorder prediction 304 337 - -
Cca08g00519 337 MobiDBLite consensus disorder prediction 35 73 - -
Cca08g00519 337 Gene3D - 135 264 - -
Cca08g00519 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 7 325 IPR039605 GO:0003680
Cca08g00519 337 CDD DUF296 134 248 IPR005175 -
Cca08g00519 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 7 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00519 Cca-Chr8 8430137 8436060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00519 45 263 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 62.338 4.45e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00519 - - gmx:102667678 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01704 02 36004701 36010982 Cca08g00519 08 8430137 8436060 ECH
Cca08g00519 08 8430137 8436060 Cca08g00519 08 8430137 8436060 ECH
Cca08g00519 08 8430137 8436060 Cca02g01704 02 36004701 36010982 PCT