Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00510 ATGTCTTGTTCAGTGCACCTCCTTCTCCTCACCTTCTTCCTCCTGGCTTTGCTCTTACACCCTCCATGTGTTTTTGGTAATGATGAGCTTAGAGCCCTTTTGGACCTGAAATCCAGTTTGGATCCAGAGGGGCATTTTCTGTCCTCATGGACCATGGATGGCAACCCATGTGGCGGTTCCTTTGAGGGAGTGGCTTGCAATGAGAAGGGTCAGGTGGCAAATGTGTCTTTGCAGGGAAAAGGCCTCTCTGGGAGGCTCTCACCAGCCATTGGTGGACTCAAGCACTTGACAGGACTTTACTTGCATTATAACTCTTTGTATGGAGAGATTCCAAGGGAAGTTGCAAACATGACCCAACTTAGTGACTTGTACTTGAATGTGAATCACCTCTCTGGAGAAATCCCACCCGAGGTTGGCAAGATGGAGAATCTTCAAGTTTTGCAGCTTTGCTATAATCAGTTAACCGGAAGCATACCTACACAGCTTGGTGATTTGAAAAAGCTTAGTGTTCTTGCTCTTCAGTCAAACCAGTTGGCTGGAGCTATCCCTGCTAGTCTAGGTGATTTGGGAATGTTGATGAGGCTAGATTTGAGCTCTAATAGTCTCTTTGGTTCCATTCCCACCAAACTAGCTGATATTCCTTCTCTGCAAGTTTTGGATGTTCACAACAATACTCTCTCTGGGAATGTACCTCCTGCTCTGAAGAGACTAGAGGATGGATTTGTGTATGAAGAAAACATGGGATTATGTGGGGTTGGGTTTTCATCCTTGAAAGTTTGCACTGCTTCAGAACATGTCAATCTCACTCAACCAGAACCATATGGAGCAGGAGTCGGTGGTCTGTCTAGAGATATCCCTGAAACTGCTAATGTAAAGTTGCCTTGTAATACAACTCAGTGCCAAAATCCATCAAAATCCAAACAAGCAACATCTATTACAGTTGGCATAGTTCTAGCTACGATTGCAGTATCAGCAATTGGTATTTTGACGTTCACTATGTATCGTCGGCGGAAACAAAGGCTTGGAAGTGCATTTGATATCTCTGAAGGCCGTCTTAGTACAGATCAAGCCAAGGGTATATACAGGAAAAATGGATCTCCTTTGGTCAGCCTTGAGTACTCTAATGGATGGGACCCTTTGGCCGATAGCAAGAATTTCAATGGGGATAGGCAAGATGTGTTCCAGAGTTTCAGATTCAACTTGGAAGAAGTGGAGTCTGCTACTCAGTATTTCTCAGAGATGAATTTGTTGGGTAAGAGCAACTTTAGTGCAACGTATAAAGGAGTTTTGAGAGACGGTTCTGTTGTTGCTGTTAAGAGCATCAGTAAAACTAGTTGCAAATCGGACGAAGCTGAATTTTTGAAGGGATTGAACATCTTGACCTCACTGAGGAATGAGAATTTAGTGAGGCTGAGAGGATTTTGTTGTTCAAGGGGACGAGGTGAATGCTTCCTGGTCTATGATTTTGTTTCAAATGGAAATCTGATGCGCTACCTTGACGTGAAAGAAGGTGATGGAGAAGTCCTCGAATGGTCAACTAGAGTTTCTATTGCGAAAGGGATTGCTAAAGGTATAGCATATTTACATGCAAACAAAGCAAACAAACCAGCCCTTGTTCACCAAAACATCTCAGCGGAGAAAGTGCACATTGATCAGCGGTACAACCCGTTGCTTTCAGATTCCGGCCTGTACAAGCTTCTCACCAATGACATTGTCTTCTCAGCGCTAAAGGGTAGTGCAGCAAAGGGTTACCTGGCTCCAGAATACACCACCACTGGCCGGTTCACCGAGAAGAGCGATGTTTATGCATTTGGGGTGCTTCTTTTCCAGATCCTCACTGGGAAGCAGAAGATCACAAGCGCGATGCGCCTTGCTGCAGAGTCCTTCAGATTCCCAGAATTCATCGACCCGAATCTGCATGGCAGGTTTTTTGAATATGAGGCGGCTAAACTGGCGAGAATGGCCTTACTTTGCTCCCATGAGTCTCCATTTGAGAGGCCAAACTTGGAAGCCATTGTTCAAGAACTTGGAAATTGTAGTAGCTGTCTCTGA 2052 0.4479 MSCSVHLLLLTFFLLALLLHPPCVFGNDELRALLDLKSSLDPEGHFLSSWTMDGNPCGGSFEGVACNEKGQVANVSLQGKGLSGRLSPAIGGLKHLTGLYLHYNSLYGEIPREVANMTQLSDLYLNVNHLSGEIPPEVGKMENLQVLQLCYNQLTGSIPTQLGDLKKLSVLALQSNQLAGAIPASLGDLGMLMRLDLSSNSLFGSIPTKLADIPSLQVLDVHNNTLSGNVPPALKRLEDGFVYEENMGLCGVGFSSLKVCTASEHVNLTQPEPYGAGVGGLSRDIPETANVKLPCNTTQCQNPSKSKQATSITVGIVLATIAVSAIGILTFTMYRRRKQRLGSAFDISEGRLSTDQAKGIYRKNGSPLVSLEYSNGWDPLADSKNFNGDRQDVFQSFRFNLEEVESATQYFSEMNLLGKSNFSATYKGVLRDGSVVAVKSISKTSCKSDEAEFLKGLNILTSLRNENLVRLRGFCCSRGRGECFLVYDFVSNGNLMRYLDVKEGDGEVLEWSTRVSIAKGIAKGIAYLHANKANKPALVHQNISAEKVHIDQRYNPLLSDSGLYKLLTNDIVFSALKGSAAKGYLAPEYTTTGRFTEKSDVYAFGVLLFQILTGKQKITSAMRLAAESFRFPEFIDPNLHGRFFEYEAAKLARMALLCSHESPFERPNLEAIVQELGNCSSCL 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00510 683 SUPERFAMILY L domain-like 26 236 - -
Cca08g00510 683 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 681 - -
Cca08g00510 683 Pfam Leucine rich repeat 167 226 IPR001611 GO:0005515
Cca08g00510 683 SUPERFAMILY Protein kinase-like (PK-like) 388 676 IPR011009 -
Cca08g00510 683 Gene3D Transferase(Phosphotransferase) domain 1 490 682 - -
Cca08g00510 683 Gene3D Phosphorylase Kinase; domain 1 381 489 - -
Cca08g00510 683 ProSiteProfiles Protein kinase domain profile. 411 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00510 683 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 7 681 - -
Cca08g00510 683 Gene3D Ribonuclease Inhibitor 26 177 IPR032675 -
Cca08g00510 683 Pfam Protein tyrosine and serine/threonine kinase 415 676 IPR001245 GO:0004672|GO:0006468
Cca08g00510 683 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Cca08g00510 683 Gene3D Ribonuclease Inhibitor 178 246 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00510 Cca-Chr8 8233836 8237897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00510 3 524 Miscellaneous Gene Families AT4G22730 54.307 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Cca08g00510 PK_Tyr_Ser-Thr 5.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00510 - - gmx:100789253 1245.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00510 08 8233836 8237897 Cca02g01698 02 35938291 35941653 PCT