Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00509 ATGGCATCCCTTGCAGCTTCCACTGCTGCTGCTTCCCTTGGCATGTCAGAAATGCTTGGAAACCCCATCAACCTCAGTGGTGCCACAAGGCCGGCTCCATCTCCCTCTAGCCCTGCCTCCTTCAAGACTGTGGCCCTTTTCTCCAAGAAGAAGGcaccaccaccaccaccaAAGAAAGCTGTTGCTGTCTCTCCTGCCAATGAGGAGCTTGCCAAGTGGTATGGTCCTGACAGGAGGATCTTCTTGCCAGACGGTCTCTTGGACCGATCCGAGATCCCGGAGTACTTGACCGGAGAAGTCCCCGGAGACTATGGTTATGACCCCTTTGGTCTTAGCAAGAAGCCAGAAGACTTTGCCAAATATCAGGCTTTTGAGTTGATTCACGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCCGAGGCATTCAACAAATATGGAGCAAACTGTGGTCCCGAGGCTGTTTGGTTCAAGACAGGAGCTCTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCCATCCCCATCAATCTTATTGTGGCTGTCATTGCTGAGATTGTTCTTGTGGGAGGTGCTGAGTACTACAGAATTATCAATGGCCTGAACTTTGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTTGCAAATGATCCAGACCAGGCTGCACTCTTAAAGGTGAAGGAAATCAAGAATGGAAGACTTGCCATGTTTGCCATGCTTGGATTCTACTTCCAAGCCTATGTCACTGGAGAAGGCCCTGTTGAGAACCTTGCAAAACATCTCAGTGACCCTTTTGGCAACAACTTGCTCACTGTCATTGCTGGCTCTGCTGAGAGAGCTCCAACTCTCTGA 876 0.4909 MASLAASTAAASLGMSEMLGNPINLSGATRPAPSPSSPASFKTVALFSKKKAPPPPPKKAVAVSPANEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00509 291 MobiDBLite consensus disorder prediction 27 41 - -
Cca08g00509 291 Pfam Chlorophyll A-B binding protein 93 254 IPR022796 -
Cca08g00509 291 Gene3D Chlorophyll a/b binding protein domain 80 291 - -
Cca08g00509 291 SUPERFAMILY Chlorophyll a-b binding protein 73 282 - -
Cca08g00509 291 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 291 - -
Cca08g00509 291 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 291 IPR001344 GO:0009765|GO:0016020
Cca08g00509 291 MobiDBLite consensus disorder prediction 22 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00509 Cca-Chr8 8202025 8205359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00509 11 291 Chloroplast and Mitochondria Gene Families AT4G10340 82.270 8.89e-154 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00509 K08916 - gmx:100806585 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00509 08 8202025 8205359 Cca02g01697 02 35921529 35924014 PCT