Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00489 ATGGATCCACCACTTTGTGCTAATGGCTGTGGCTTCTATGGTTCTGCTGCCAACAAGAACCTTTGTTCAAAGTGTTACGGAGATTATCTCAAAGGAAAATTGATCAAATCAAAGGATGACAAGAACTTGAATGAGAAAGTTATTGTTCTTGATCATTCATCTAGTTGTCGTAAACCGTGTGATTGTTCTGAAGAATCTATGAGTGAGGGTATGGCTAATGTTTGTCTAACGGAAGATGGAAGCATGAGTGAGAAGAAAAAGAGGTGCAAGAGCTGCAACAAAAAGGTTGGACTAATAGGGTTCGAGTGTCGTTGTGGGGATGTGTTTTGTGGAAGACATAGATACCCAGAACACCATGCATGCAAAGTTGATTTCAAGCAAATTGCTCGTCAGGCTTTGATTAAACAAAATCCACTGTGTAATGGCGATAAGTTAGAAGATAGAATTTAG 450 0.3956 MDPPLCANGCGFYGSAANKNLCSKCYGDYLKGKLIKSKDDKNLNEKVIVLDHSSSCRKPCDCSEESMSEGMANVCLTEDGSMSEKKKRCKSCNKKVGLIGFECRCGDVFCGRHRYPEHHACKVDFKQIARQALIKQNPLCNGDKLEDRI 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00489 149 Pfam AN1-like Zinc finger 89 124 IPR000058 GO:0008270
Cca08g00489 149 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Cca08g00489 149 SUPERFAMILY AN1-like Zinc finger 82 143 IPR035896 -
Cca08g00489 149 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Cca08g00489 149 Gene3D - 1 46 - -
Cca08g00489 149 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8-RELATED 3 149 - -
Cca08g00489 149 ProSiteProfiles Zinc finger AN1-type profile. 83 129 IPR000058 GO:0008270
Cca08g00489 149 PANTHER AN1-TYPE ZINC FINGER PROTEIN 3 149 - -
Cca08g00489 149 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 38 - -
Cca08g00489 149 Pfam A20-like zinc finger 5 26 IPR002653 GO:0003677|GO:0008270
Cca08g00489 149 Gene3D - 62 143 IPR035896 -
Cca08g00489 149 SMART AN1_Zf_4 89 126 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00489 Cca-Chr8 7971666 7972115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00489 5 146 C2H2 Transcription Factor Family AT3G52800 38.065 2.57e-26 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00489 - - gmx:102663114 195.667