Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00485 ATGCCTGCCATGAAAAAGAATCCTGAAGAGAGTCGGTTTGGATCTGTATTCAACAAGTTGGAAAAGGTGCTTGGAGAACCTGTTGACTTTGAACTTCCAGATTGGATTAATAAATTGAAGCCTATGCAGTACACCTATATAAAACGCAATATATATGTCACTAAGAAGGTCAAGAAATCTCGGTTTGACGATGATGGCATATTCTGTTCCTGTACTCCTTCCCCTGGATCTACCAGTGTATGTGGAAGAGATTGCCACTGTGGGATGCTTCAGTCTAGCTGTTCATCAGGCTGTAAATGTGGGAGCTCATGTCTTAACAAACCGTTTCAGAGTCGTCCTGCGAAAAAGATGAAATTGGTTAAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAGCTTGGGGAGTTTGTCATCGAATATGTTGGAGAAGTAATTGATGACAAAACATGTGAGGAAAGGCTTTGGAATATGAAGCATCGTGGGGAAACAAATTTCTACTTATGTGAAATCAATCGAGATATGGTGATTGATGCAACATATAAGGGAAACAAATCAAGATACATTAATCATAGTTGCTGCCCCAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCGACTCGTGACATAAAAAAGGGCGAGCATCTGACTTATGATTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGCTGAGTGTAGGCGTAAGTTGGGTGTCCGACCTACCAAGCCTAAAATGGCTTCAGATGCTGCATTAAAATTAGTTGCATATCAGGTTTATCATAATGGAGGTTTGCAAATTGGAAGTTCTCGTGTTGTTGACCAATCAAAGTGCTTGCACAATTGCATTGGTGAAGTTATTAGGATAAAACAGCTTGGAAATGTGCGGTTTGGAATTATTAAACGGTTTGATAAACATTCTCGAAAACACTCGGTCATGTTTGAGGATGGTTGTGTTGAAATTTTTGACATGTCAAAAGAGGACTGGGAACTTGTGAGATAG 1050 0.399 MPAMKKNPEESRFGSVFNKLEKVLGEPVDFELPDWINKLKPMQYTYIKRNIYVTKKVKKSRFDDDGIFCSCTPSPGSTSVCGRDCHCGMLQSSCSSGCKCGSSCLNKPFQSRPAKKMKLVKTEKCGSGIVADEDIKLGEFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGEHLTYDYQFVQFGADQDCHCGAAECRRKLGVRPTKPKMASDAALKLVAYQVYHNGGLQIGSSRVVDQSKCLHNCIGEVIRIKQLGNVRFGIIKRFDKHSRKHSVMFEDGCVEIFDMSKEDWELVR 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00485 349 ProSiteProfiles Post-SET domain profile. 238 254 IPR003616 -
Cca08g00485 349 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 37 292 IPR025787 -
Cca08g00485 349 Gene3D SET domain 34 270 IPR046341 -
Cca08g00485 349 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 13 347 - -
Cca08g00485 349 PANTHER SET DOMAIN PROTEINS 13 347 - -
Cca08g00485 349 SMART PostSET_3 238 254 IPR003616 -
Cca08g00485 349 ProSiteProfiles AWS domain profile. 64 113 IPR006560 GO:0005634|GO:0018024
Cca08g00485 349 SUPERFAMILY SET domain 37 250 IPR046341 -
Cca08g00485 349 SMART shorttest3 64 114 IPR006560 GO:0005634|GO:0018024
Cca08g00485 349 SMART set_7 115 238 IPR001214 GO:0005515
Cca08g00485 349 CDD SET_ASHR3-like 116 254 - -
Cca08g00485 349 ProSiteProfiles SET domain profile. 115 232 IPR001214 GO:0005515
Cca08g00485 349 Pfam SET domain 126 231 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00485 Cca-Chr8 7913369 7923858 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00485 94 250 C2H2 Transcription Factor Family AT2G23740 35.028 1.06e-22 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca08g00485 SET 1.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00485 - - gmx:100808183 686.797