Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca08g00483 | ATGGCGACGCAGATGAGTAAGAAGAGAAAGTTTGTGGCCGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACGCGTGAGTTGGCGGAGGACGGTTACTCCGGCGTCGAGGTTAGGGTTACGCCCATGCGCACCGAGATCATCATCAGAGCCACCAGAACTCAAGCCGTTCTCGGTGAGAAGGGAAGGAGAATTAGGGAACTAACCTCGGTGGTGCAGAAGAGGTTCAAGTTTCCCGAGAACAGTGTTGAGCTTTATGCTGAAAAGGTCAACAACAGAGGTCTTTGTGCTATTGCTCAGGCTGAATCTCTTCGCTACAAGCTCCTTGGTGGCCTTGCTGTTCGTAGGGCATGTTATGGTGTTTTAAGATTTGTGATGGAAAGCGGTGCCAAGGGATGTGAGGTCATTGTTAGTGGAAAGTTGAGAGCTCAGAGAGCCAAGTCCATGAAATTCAAGGACGGTTACATGATTTCTTCTGGACAGCCAGTCAAGGATTACATTGACTCTGCAGTCAGACATGTGCTCCTAAGACAGGGTGTTCTTGGTATCAAGGTGAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATATTGTCACAATCCACACTCCAAAGGATGAGGAAGAATACAAGCCACCAGTTGCTGCTGCTGCTGTTTTGGCAACTGATATTGAGGTCCCTGTTGCTTGA | 717 | 0.4881 | MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKDEEEYKPPVAAAAVLATDIEVPVA | 238 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca08g00483 | 238 | CDD | 40S_S3_KH | 15 | 95 | - | - | |
Cca08g00483 | 238 | TIGRFAM | uS3_euk_arch: ribosomal protein uS3 | 8 | 210 | IPR005703 | GO:0003735|GO:0006412|GO:0015935 | |
Cca08g00483 | 238 | Pfam | Ribosomal protein S3, C-terminal domain | 106 | 188 | IPR001351 | GO:0003735|GO:0006412 | |
Cca08g00483 | 238 | ProSitePatterns | Ribosomal protein S3 signature. | 147 | 183 | IPR018280 | - | |
Cca08g00483 | 238 | Pfam | KH domain | 20 | 93 | IPR004044 | GO:0003723 | |
Cca08g00483 | 238 | PANTHER | RIBOSOMAL PROTEIN S3, PUTATIVE-RELATED | 2 | 235 | - | - | |
Cca08g00483 | 238 | SUPERFAMILY | Prokaryotic type KH domain (KH-domain type II) | 10 | 99 | IPR009019 | GO:0003723 | |
Cca08g00483 | 238 | Gene3D | - | 1 | 91 | IPR015946 | - | |
Cca08g00483 | 238 | SUPERFAMILY | Ribosomal protein S3 C-terminal domain | 93 | 191 | IPR036419 | - | |
Cca08g00483 | 238 | Gene3D | - | 93 | 219 | IPR036419 | - | |
Cca08g00483 | 238 | ProSiteProfiles | Type-2 KH domain profile. | 21 | 92 | IPR004044 | GO:0003723 | |
Cca08g00483 | 238 | PANTHER | 30S/40S RIBOSOMAL PROTEIN S3 | 2 | 235 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca08g00483 | Cca-Chr8 | 7904437 | 7906518 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca08g00483 | 1 | 237 | Cytoplasmic Ribosomal Protein Gene Family | AT2G31610 | 86.920 | 2.02e-152 | 422 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca08g00483 | K02985 | - | gmx:100795581 | 446.432 |