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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Cca08g00483
ATGGCGACGCAGATGAGTAAGAAGAGAAAGTTTGTGGCCGATGGAGTGTTCTTCGCTGAACTGAACGAGGTTCTGACGCGTGAGTTGGCGGAGGACGGTTACTCCGGCGTCGAGGTTAGGGTTACGCCCATGCGCACCGAGATCATCATCAGAGCCACCAGAACTCAAGCCGTTCTCGGTGAGAAGGGAAGGAGAATTAGGGAACTAACCTCGGTGGTGCAGAAGAGGTTCAAGTTTCCCGAGAACAGTGTTGAGCTTTATGCTGAAAAGGTCAACAACAGAGGTCTTTGTGCTATTGCTCAGGCTGAATCTCTTCGCTACAAGCTCCTTGGTGGCCTTGCTGTTCGTAGGGCATGTTATGGTGTTTTAAGATTTGTGATGGAAAGCGGTGCCAAGGGATGTGAGGTCATTGTTAGTGGAAAGTTGAGAGCTCAGAGAGCCAAGTCCATGAAATTCAAGGACGGTTACATGATTTCTTCTGGACAGCCAGTCAAGGATTACATTGACTCTGCAGTCAGACATGTGCTCCTAAGACAGGGTGTTCTTGGTATCAAGGTGAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATATTGTCACAATCCACACTCCAAAGGATGAGGAAGAATACAAGCCACCAGTTGCTGCTGCTGCTGTTTTGGCAACTGATATTGAGGTCCCTGTTGCTTGA
717
0.4881
MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKDEEEYKPPVAAAAVLATDIEVPVA
238
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Cca08g00483
238
CDD
40S_S3_KH
15
95
-
-
Cca08g00483
238
TIGRFAM
uS3_euk_arch: ribosomal protein uS3
8
210
IPR005703
GO:0003735|GO:0006412|GO:0015935
Cca08g00483
238
Pfam
Ribosomal protein S3, C-terminal domain
106
188
IPR001351
GO:0003735|GO:0006412
Cca08g00483
238
ProSitePatterns
Ribosomal protein S3 signature.
147
183
IPR018280
-
Cca08g00483
238
Pfam
KH domain
20
93
IPR004044
GO:0003723
Cca08g00483
238
PANTHER
RIBOSOMAL PROTEIN S3, PUTATIVE-RELATED
2
235
-
-
Cca08g00483
238
SUPERFAMILY
Prokaryotic type KH domain (KH-domain type II)
10
99
IPR009019
GO:0003723
Cca08g00483
238
Gene3D
-
1
91
IPR015946
-
Cca08g00483
238
SUPERFAMILY
Ribosomal protein S3 C-terminal domain
93
191
IPR036419
-
Cca08g00483
238
Gene3D
-
93
219
IPR036419
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Cca08g00483
Cca-Chr8
7904437
7906518
Tandem
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Cca08g00483
1
237
Cytoplasmic Ribosomal Protein Gene Family
AT2G31610
86.920
2.02e-152
422
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Cca08g00483
K02985
-
gmx:100795581
446.432
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