Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00482 ATGCTGTGCAAACCATCTTTGAAGTCTTTGACGATTGTCATGGCTAATTTTCTGGCAATGTTTTTGGTCATGGAAATGATACTAGTGAGCGGTTTCCGTTCGGGAGCAAGTGGCTTGAACATGAACTACTACTTGTTGAGCTGTCCTTTTGCTGAACCTATTGTTAAGAACATAGTCAACAGAGCTCTGCAGGATGATCCTACCCTTGCAGCAGGTCTTGTTAGAATGCATTTCCATGACTGTTTCATAGAGGGATGTGATGGTTCAGTTCTGATCGACTCCACTAAGGACAACACAGCAGAAAAGGATTCACCAGCAAATTTGAGTTTGAGAGGCTATGAAATCATAGATGAAATCAAGGAAGAGCTTGAAACACAATGCCCAGGAGTGGTTTCATGCGCTGATATTCTTGCTATGGCTGCTAGAGATGCAGTTTTCTTTGCAGGGGGTCCTGTATATGACATACCAAAAGGAAGGAGGGATGGAACAAGGTCCAAAATTGAGGATACTATCAATCTGCCTTCTCCCATTTTCAATGCTTCTGAGCTCATCAAGATGTTCGGACAACATGGGTTTTCTGCAAGAGACATGGTGGCTCTCTCAGGAGCTCACACATTAGGAGTGGCAAGGTGTTCTTCGTTCAAGAACAGGCTGAGGCCAGTGGATCCATCTCTGGACTCGGAATTCGCAAAGACACTCTCCAAGACATGCAGTGGTGGCGACAGTGCCGAGCAACCCTTGGACGCCACGAGGAACGATTTCGACAACATGTACTTCAACGCTTTGCTCTCCAAAAACGGCCTTCTAACCTCCGACCAAACCTTGTACACTAGCCCACAAACCAGGAACATTGTCAACTCTTATGCCATGAACCAGGCCTTGTTTTTCTTGGATTTTCAGCAGGGGATGCTCAAGATGAGCATGCTCGATGTCAAACAAGGCTCCAAGGGGGAAGTACGGACAAATTGTCGTAAAATAAACTGA 984 0.4563 MLCKPSLKSLTIVMANFLAMFLVMEMILVSGFRSGASGLNMNYYLLSCPFAEPIVKNIVNRALQDDPTLAAGLVRMHFHDCFIEGCDGSVLIDSTKDNTAEKDSPANLSLRGYEIIDEIKEELETQCPGVVSCADILAMAARDAVFFAGGPVYDIPKGRRDGTRSKIEDTINLPSPIFNASELIKMFGQHGFSARDMVALSGAHTLGVARCSSFKNRLRPVDPSLDSEFAKTLSKTCSGGDSAEQPLDATRNDFDNMYFNALLSKNGLLTSDQTLYTSPQTRNIVNSYAMNQALFFLDFQQGMLKMSMLDVKQGSKGEVRTNCRKIN 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00482 327 SUPERFAMILY Heme-dependent peroxidases 38 327 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca08g00482 327 Pfam Peroxidase 55 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g00482 327 PRINTS Haem peroxidase superfamily signature 70 84 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g00482 327 PRINTS Haem peroxidase superfamily signature 131 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g00482 327 PRINTS Haem peroxidase superfamily signature 149 161 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g00482 327 PRINTS Haem peroxidase superfamily signature 196 211 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g00482 327 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g00482 327 CDD secretory_peroxidase 38 326 IPR033905 GO:0004601|GO:0042744
Cca08g00482 327 ProSitePatterns Peroxidases active site signature. 70 81 IPR019794 GO:0004601
Cca08g00482 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 196 206 IPR019793 -
Cca08g00482 327 Gene3D Peroxidase, domain 2 174 306 - -
Cca08g00482 327 PRINTS Plant peroxidase signature 48 67 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g00482 327 PRINTS Plant peroxidase signature 72 92 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g00482 327 PRINTS Plant peroxidase signature 111 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g00482 327 PRINTS Plant peroxidase signature 130 140 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g00482 327 PRINTS Plant peroxidase signature 149 164 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g00482 327 PRINTS Plant peroxidase signature 195 207 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g00482 327 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g00482 327 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g00482 327 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca08g00482 327 Gene3D - 42 327 - -
Cca08g00482 327 PANTHER PEROXIDASE 47 28 325 - -
Cca08g00482 327 ProSiteProfiles Plant heme peroxidase family profile. 38 327 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca08g00482 327 PANTHER PEROXIDASE 25-RELATED 28 325 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00482 Cca-Chr8 7885901 7889794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00482 12 327 Peroxidase AT4G33420 73.734 1.32e-172 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00482 K00430 - gmx:100809245 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00482 08 7885901 7889794 Cca02g01687 02 35822211 35824954 PCT