Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00471 ATGGCACCAACTGGTGAAGGAGTTGAGAAGATGAATGAAGAGGATCGGGTAAACAGCAGTGATTATGAGCATGACATAGAAAAAGATGTGAATGAGGAAATTGGAAGGTATCGGTCAGGGTCAGGGTTATCTGATAGAAACATGGCTCATTCAAAGCCACTTCTTGTGAAGAGGACTAACACCACCTCCCAAATTGCTATAGTTGGTGCCAACCTCTGCCCTATTGAAAGCCTTGACTATGAGACTTTTGATAATGAAATATTGAAGAAGGACTGGCGTTCGAGGAAGAAGGTTGAGATAATCCAGTATGTGATGCTTAAGTGGGTATTTGCTCTTCTTATTGGATTAGGAACTGGATTGGTTGGCTTCTTTAACAGTTTTGCAGTTGAGAACATAGCTGGTTTCAAGTTGCTTATGACCACCAATCTCATCTCTAAACACAGATATCTTGAGGCATTTTTAGCATATGCTGGTGTGAACATATGTTTAGCAGCAGCAGCTGCTGCACTTTGTGCTTTCATTGCGCCAGCAGCTGCAGGCTCTGGCATTCCAGAGGTGAAAGCATATCTCAATGGCGTGGATGCTCACCATATACTGGCTCCAAGCACCCTTTTTGTAAAGATATTTGGTTCCATCTTGGGAGTTTCTGCTGGATTTGTGGTGGGCAAAGAGGGACCTATGGTACATACAGGGGCATGCATAGCTTCTTTATTGGGGCAGGGTGGATCTCGCAAGTATCACTTGACTTGCCCTTGGCTTAGATATTTCAAAAATGATCCAGACCGACGAGACATGATCACTTGtggtgcagctgctggtgttgctgctgcCTTTCGTGCACCAGTAGGTGGTGTTCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTGGCGGAGTTCTCTTCTATGGAGGACATTTTTCACAACAGCAGTGGTAGCTATTGTTTTAAGAGTTGCAATTCAGTTTTGTGCCACAGGGAAATGTGGGCTATTTGGGGAAGGTGGTCTGATAATGTATGATGTTAGTTCACCCAATATAACATATAGTGTTAGTGACATGTTAGCAGTACTTCTTTTGGGAGCCATTGCTGGAATCCTTGGAAGCATATATAATTACCTTGTGGATAAGGTTGTTCGGACATATAGCGTCATCAATGAAAAAGGTGCAGCTTTCAAAATCTCTCTTGTTGTGACAATTGCACTTTTAACATCATGTTGTTTTTACTTCTTGCCATGGATCGCAAACTGTAGTCCATGTCCTTCTGGTTCAACAGTGAGCTGCCCCTCTCTGGATGAGTCTGGAGAATACAAAAGTTTTCAATGTCCACCAGGCTACTACAATGATCTTGCCTCCCTCTTCCTAAACACAAATGATGATGCTATTCGTAATCTATTCAGCCCCAGAATAATCAAAGAGTTTCACATTTCTAGTTTGTTTATCTACTTTGCTACTATTTACTTTCTTGGCATAATCACTTATGGTATCGCCATTCCATCCGGGCTCTTCATTCCTGTGATACTTGCTGGTGCTTGCTATGGCCGGCTTTTTGGCCGGCTCGTTGAATCAATGACCAAGCTTGACAGAGGACTCTTTGCCCTACTTGGAGCTGCCTCTTTCCTTGGTGGCACCATGAGAATGACGGTGTCTCTTTGTGTCATATTGCTTGAGCTCACCAATGATCTCTTGTTACTTCCACTTGTGATGTTGGTCTTGTTAGTCTCAAAAACTGTGGCTGACAACTTCAACAAGGGTGTCTATGATCAAATACTTAAGATCAAAGGACTTCCTTATTTGGAGGCTCATGCAGAACCTTACATGCGGAATTTGGTTACGCGTGATGTTCTTTCAGGTCCATTGATAACCTTTTCTGGCATTGAAAAGGTGGGGAATATATTGCATGCTTTGAATGCTACAAGGCACAATGGGTTTCCAGTCATTGATGAACCACCTTTCTCAGATGCACCAGAATTGTGTGGACTTGTGCTGAGGTCTCATTTGCTAGTGTTGCTGAAGGAGAAGATTTTTTCAAGAAATAGGGGTTTTTCAGAAAGCATCTTGCACATAATTTCTTCTTTGGATTTTGGAAAGGCAGGGTCAGGAAAGGGGATCAAGCTAGAGGATCTTGATATCCAAGAGGAAGAGATGGATATGTATGTTGATCTCCATCCCATCACTAATGCATCCCCTTACACTGTGGTTGAGACAATGTCACTTGCCAAAGCTGCTGTTATTTTCCGCCAACATGGACTCAGGCACATGTGTGTTGTTCCAAAGAGCCAAGGGAGACCTCCGGTTGTTGGGATTCTAACACGCCATGATTTCATGCCAGAGCATGTTTTGGGACTTTACCCTGATATCAAGGCTCACAAATGGCAATGA 2376 0.4268 MAPTGEGVEKMNEEDRVNSSDYEHDIEKDVNEEIGRYRSGSGLSDRNMAHSKPLLVKRTNTTSQIAIVGANLCPIESLDYETFDNEILKKDWRSRKKVEIIQYVMLKWVFALLIGLGTGLVGFFNSFAVENIAGFKLLMTTNLISKHRYLEAFLAYAGVNICLAAAAAALCAFIAPAAAGSGIPEVKAYLNGVDAHHILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTCPWLRYFKNDPDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSSLLWRTFFTTAVVAIVLRVAIQFCATGKCGLFGEGGLIMYDVSSPNITYSVSDMLAVLLLGAIAGILGSIYNYLVDKVVRTYSVINEKGAAFKISLVVTIALLTSCCFYFLPWIANCSPCPSGSTVSCPSLDESGEYKSFQCPPGYYNDLASLFLNTNDDAIRNLFSPRIIKEFHISSLFIYFATIYFLGIITYGIAIPSGLFIPVILAGACYGRLFGRLVESMTKLDRGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLVSKTVADNFNKGVYDQILKIKGLPYLEAHAEPYMRNLVTRDVLSGPLITFSGIEKVGNILHALNATRHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKEKIFSRNRGFSESILHIISSLDFGKAGSGKGIKLEDLDIQEEEMDMYVDLHPITNASPYTVVETMSLAKAAVIFRQHGLRHMCVVPKSQGRPPVVGILTRHDFMPEHVLGLYPDIKAHKWQ 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00471 791 SUPERFAMILY Clc chloride channel 87 600 IPR014743 -
Cca08g00471 791 MobiDBLite consensus disorder prediction 8 24 - -
Cca08g00471 791 SMART cbs_1 617 670 IPR000644 -
Cca08g00471 791 SMART cbs_1 727 778 IPR000644 -
Cca08g00471 791 ProSiteProfiles CBS domain profile. 723 785 IPR000644 -
Cca08g00471 791 SUPERFAMILY CBS-domain pair 601 774 IPR046342 -
Cca08g00471 791 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 32 789 - -
Cca08g00471 791 MobiDBLite consensus disorder prediction 1 24 - -
Cca08g00471 791 Gene3D - 598 779 IPR046342 -
Cca08g00471 791 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 32 789 - -
Cca08g00471 791 Pfam Voltage gated chloride channel 164 578 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca08g00471 791 CDD CBS_pair_voltage-gated_CLC_euk_bac 611 776 - -
Cca08g00471 791 Gene3D Clc chloride channel 99 597 - -
Cca08g00471 791 PRINTS Plant CLC chloride channel signature 292 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cca08g00471 791 PRINTS Plant CLC chloride channel signature 306 316 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cca08g00471 791 PRINTS Plant CLC chloride channel signature 324 331 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cca08g00471 791 PRINTS Plant CLC chloride channel signature 448 464 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cca08g00471 791 CDD ClC_6_like 76 597 - -
Cca08g00471 791 Pfam CBS domain 727 773 IPR000644 -
Cca08g00471 791 PRINTS Chloride channel signature 176 193 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca08g00471 791 PRINTS Chloride channel signature 207 226 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca08g00471 791 PRINTS Chloride channel signature 271 290 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca08g00471 791 PRINTS Chloride channel signature 496 516 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca08g00471 791 PRINTS Chloride channel signature 528 544 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca08g00471 791 PRINTS Chloride channel signature 546 565 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca08g00471 791 PRINTS Chloride channel signature 584 598 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00471 Cca-Chr8 7663916 7677908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00471 15 789 Ion Channels AT5G49890 71.374 0.0 1093
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00471 K05016 - gmx:100809070 1325.84