Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00470 ATGGCAACTAGACTTCAGTTTGAAAATAATTGTGAAGTTGGAGTGTTCTCTAAACTTACAAATGCCTACTGTTTGGTTGCCATTGGAGGTTCTGAAAACTTCTACAGCGTATTTGAATCCGAGTTAGCAGATGTTATCCCTGTGGTCAAGACATCCATTGGTGGTACTCGAATTATTGGCCGTCTTTGTGCTGGAAACAAGAATGGGCTTCTCTTGCCCCATACCACCACAGACCAAGAACTTCAACATTTAAGAAACAGTCTACCTGATCAAGTTGTTGTTCAGCGAATTGATGAAAGGTTATCTGCTCTGGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAGGGAGACTGAGGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACCATTGCTGGTAATATTCTTGTTGGCAGCTACTGTGCCTTCTCCAACAGAGGTGGTTTGGTCCACCCTCATACTTCCATAGAAGACTTGGATGAACTTTCTACACTTCTTCAGGTTCCTTTGGTGGCTGGGACTGTGAACCGTGGTAGTGAAGTAATTGCGGCTGGAATGACTGTCAATGATTGGACAGCATTTTGTGGTTCTGACACCACAGCAACAGAGCTATCTGTAATTGAGAGTGTTTTCAAGCTCAGAGAAGCCCAGCCAAGACTTCAATTTGAAAATAATTGTGAAGTTGGAGGCTTCAGTAAACTTACTAATGCCTACTGTTTGGTCCCCATTGGAGGTTCTGAGAACTTCTACAGTGTATTTGAAGCTGCATTAGCAGATGTTATCCCTGTGGTCAAGACATCCATTGCTGGTATTCGTACTCTTGGTTATCAATGTGCTGGAAACAAGAATGGGCTTCTTGTGCCCCATACCACCACAGACCAAGAACTTCAACATTTGAGGAATAGTCTACCTGATCAAGTTGTTGTTCAGAGAATAGAAGAAAGATTATGTGCTCTGGGAAATTGTATAGCATGTAATGATCATGTGGCCCTTGCACACACTGATCTTGATGCGGAGACTGAGGAGATTATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAAACCATTGCTGGTAATATTCTTGTTGGTAGCTACTGTGCCTTCTCTAATAGAGGTGGTTTG 1158 0.4283 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSVFESELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPRLQFENNCEVGGFSKLTNAYCLVPIGGSENFYSVFEAALADVIPVVKTSIAGIRTLGYQCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIEERLCALGNCIACNDHVALAHTDLDAETEEIIADVLGVEVFRQTIAGNILVGSYCAFSNRGGL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00470 386 SUPERFAMILY Pentein 230 386 - -
Cca08g00470 386 SMART eIF6neu2 229 386 IPR002769 GO:0042256|GO:0043022
Cca08g00470 386 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Cca08g00470 386 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Cca08g00470 386 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 229 - -
Cca08g00470 386 SUPERFAMILY Pentein 1 224 - -
Cca08g00470 386 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 230 386 - -
Cca08g00470 386 Hamap Translation initiation factor 6 [eif6]. 1 250 IPR002769 GO:0042256|GO:0043022
Cca08g00470 386 Hamap Translation initiation factor 6 [eif6]. 246 386 IPR002769 GO:0042256|GO:0043022
Cca08g00470 386 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 224 IPR002769 GO:0042256|GO:0043022
Cca08g00470 386 TIGRFAM eIF-6: putative translation initiation factor eIF-6 230 386 IPR002769 GO:0042256|GO:0043022
Cca08g00470 386 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 229 IPR002769 GO:0042256|GO:0043022
Cca08g00470 386 Gene3D - 1 225 - -
Cca08g00470 386 Gene3D - 226 386 - -
Cca08g00470 386 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Cca08g00470 386 Pfam eIF-6 family 230 386 IPR002769 GO:0042256|GO:0043022
Cca08g00470 386 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 230 386 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00470 Cca-Chr8 7636591 7648766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00470 230 386 Eukaryotic Initiation Factors Gene Family AT3G55620 87.898 5.75e-98 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00470 K03264 - tut:107362863 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00470 08 7636591 7648766 Cca02g01680 02 35759641 35763875 PCT