Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00465 ATGCACCCAAATCTGAAATTGGTGGAACCAACTTCTGGTGGGAATGATGAGGGGAGGGCAACGTCTGATCAACAAATGGGAAGTAGAAGTTTTTTCGTCTGGGACAAAGGAAAAGAATCAAAGGTAACGATAGAGGACAACTTGGGATGCGAGGCCACTACAGGGGATGTGAATGAGATATCTTACTGGTTCAACTTCCTTTTCCCTATTGTTTGTATTTTCTTTACAGCTTGCAGAAGGTTAAGGGAAACGGCTACAATTGAAGCAGAGATGGAAATTCAAATTGTGGAAAATCTAGCTGAAGTTGAGAAGTTAGTCAAAAGCAAATCAAATGAAGAAAAGGCTAAAGAAGCTGCTGTTGAAAAAGATCCTAATACGTTGGAGTGTCCACTCAATGCGTTTTCCCTTTTCTTGCAAAAATTTAAAAAACTTTACAATGAAGCAAATCTTGATTCCGAAAATGTTGAAAGGGTTAATAAAATGGCTGTTAAAACATGGAAGTCCATGACAAATGAGGAAAAAAAGACTTATTTTGATACAGCAGCTAAACTCAACGCAGAGGCTAAGAAATTGCAGCATATTGCATTAAATGAAAGGTTGGCTCAGTCTAATCAAATAGGTAAATGCACTCCACTTGGCACAAGTAGAACAATCAATGATTTTCAAGTAAAACAAATGGGGAAAAGAGAACATAAGCCCAAAGTTCATTTTGATATGACTAACTTGGATAAGTCAAAAAAGGGAAAAACTCACAAGAAACAACATAAGCAGAACATTCAAAATAAGGAAAATCTTGCTAAAACCATTCAGATCAAGGAACATAATTGCTTCCTTTATTTTGTTTATGTTGCAGGTTTTAGAGTGAATATGGTGGTGGTGGTGGCTGTGGCAATTTAG 897 0.369 MHPNLKLVEPTSGGNDEGRATSDQQMGSRSFFVWDKGKESKVTIEDNLGCEATTGDVNEISYWFNFLFPIVCIFFTACRRLRETATIEAEMEIQIVENLAEVEKLVKSKSNEEKAKEAAVEKDPNTLECPLNAFSLFLQKFKKLYNEANLDSENVERVNKMAVKTWKSMTNEEKKTYFDTAAKLNAEAKKLQHIALNERLAQSNQIGKCTPLGTSRTINDFQVKQMGKREHKPKVHFDMTNLDKSKKGKTHKKQHKQNIQNKENLAKTIQIKEHNCFLYFVYVAGFRVNMVVVVAVAI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00465 298 Coils Coil 252 272 - -
Cca08g00465 298 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 83 197 - -
Cca08g00465 298 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 83 197 - -
Cca08g00465 298 MobiDBLite consensus disorder prediction 1 25 - -
Cca08g00465 298 SUPERFAMILY HMG-box 122 187 IPR036910 -
Cca08g00465 298 Pfam HMG (high mobility group) box 130 190 IPR009071 -
Cca08g00465 298 Gene3D High mobility group box domain 107 193 IPR036910 -
Cca08g00465 298 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 127 190 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00465 Cca-Chr8 7570693 7583739 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Cca08g00465 HMG_box 2.9e-07 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00465 - - ccaj:109818511 207.223