Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00458 ATGGCACAAGAAGGatcatcctcttcttcaatatccaaatacacttacgatgtgtttcttagttttcgaggtgaagatactcgttatggtttcactggtaatctgtacagtgctttgagtcaaaggggaatctttaccttcatagacgatgaggctctaccaaaaggccaagaaatcacaccttctctccgcaaagcaatacaagaatcgaggatgtccatcgttattttttccaaaaactatgccacctcaactttttgtttgaatgagcttgtccagatccttgagtgttacacgaaacaaaacatgtggattttgccagtgttttatgatgttgatccatcacacgtgcgacatcaaaaagggagttacgaagatgcgtttgcacagcacgaacgtggaagattcaaagatgatattcagttgctgcaaaaatggaagttggctttgagtcaagctgctgatttgtctggtttgcacttcaaaattggTGATGAATATGAGTCTGAATTAATTAAAAAGATCACAGAAGAGATCTCTAGTAAGCTTAATCGACCTGCCTTACATATTGCTGATTATCCTGTTGGATTGAGTGCTCGGATGCGACAAATAAGAAAGCTTATAGGTGCTgagtttgataacaaagtgaccatgattgggattcatggaatgggagggataggaaaatcaactcttgcACGTGCCATGTATAATTTGATGGCACATCAATTTGAAGCTTCTTACTTTCTTGCGAATGTTAGAGAAAAATCAGTTCAGGATGGCCTAGTGCATATCCAACAGAATATGCTTTCTGAGTTAGTCAGTGAAAGAAATATCAAGCTGGGAGATGTGTATCAAGGAATTCCAATACTACAACAAAGACTTTGTCGTAAAAAGGTCCTTCTTGTTCTTGATGATATTAACAAAAAAGAACAATTGCAAGCAACTGCTGGAGGCCTTGATTGGTTTGGTTTAGGCAGCATCATCATTATAACAACAAGGGATAAGCATTTGTTAGATATTCATGGAATTGAAAAACAATATGAGGTTAATGAATTTAATGATGTTGAAGCTCTTGAATTATTTAGGTGGAATGCTTTCAAAAACCAAAAAGTTGATTCAGATTATGAGGAAATTATAAAGCGTGCAATACATTATGCCGATGGTCTTCCACTAGCTTTGGAAACAATAGGCTCAAATTGTTTCGGTAAAACATTAGATGAATGGAAATCTGCATTAGAAGCATATGAGGGAATTACAGACAGGAATGTTCAGGAAAttcttaggattagttatgatagtttggatgctaatgaaaaggaaatatttcttgacatagcttgcttcttcaaaggatgcactctaagatatgttacatatatgcttgaggcaagaggttttcatccaaaatatggtatcagagtgctggaagaaaaatctctcattaaaatttgtagatgtcatgaacatgtgataatgcatgatttgattcaatctatgggaagggaaatagttaaacaacaatcaaatttgcctaaaaaacggaataggttatggttttatgaggaCATTGTTCGCGTTTTGGAGAAAAACACAGAAAATGATGAAATTGAAGCCATTATGTTGGATGTGCCACAAGACCAGGAAGTGCAGTGGAATCAAAAGGTGTTTGGAAAATTGAAAAACCTACAGATGATATTGATCAAAAAGAATAATGGCTTTCTTAGAAGCTTTAAAGATCTCCCTAACAACTTGAGAGTGCTCGAATGGTGTAGATATCCTGCAGCCACTTTACCATCTAATTTTCATTTGAAGAATCTTGTCGTACTCAACTTGTCATATAGTAAATTTGGATGGGAGAAACCATTTGAGAATTCAAACATATTGAGACACTTGGTTCTTAGAGGTTGTGAGAACATAAGACGAATTCCAAACATGTCTGGCTTCCCCAATTTGATAGAATTGGTAGTTGGTGAATGCACAAATTTGATTGAGATTCATGATTCGGTTGGATTGTTACATAATCTTCAAAGGTTTTGTGCCGAAGGATGTACCAAGCTAATGTTTGGTCCTCGTGGAATAAAGTTGACCGCTTTAGAACAGCTTTGCCTTCGTGACTGCAGCAGTCTTGTCATGTTTCCAGAAATATTGGCACCAATGCACAAGCTAAAATATGTTGACTTAGAAGGAACTTCCATAAATAATTTACCACTTTCAATGCAAAATCTTAAAGGCCTTCAAAATTTATCCCTAGGGACATGCAAAATGCTTGATAGGTTTGATGCATTCAAATTCTTTCAAATGCTGCCAGTGTTGTTTCCCAATTTGACAAAGCTATATTTAAAATACTCAAATTTGACGATCCTTCCTACGTGCATTGAAGAATGTCAATCCTTGAAGATTCTACATGTGTCTAACTGCAAGAAGCTTCAAGAAATTAGAGGACTTCCATCGAGCGTAACTGAGTTCTTCGCGGCAAATACTTTAGTGGAAGTCGAGTCTTTCAACAATTTACTCAGACGGGCAATTGATACTACTTCAATAAGAATCTCTGTTCAGCCAGGTCAACGGATCCCAAAATGGTTTGACCACTCTACCGGGGGAAACTCTCTACGTTTCTGGTTTCGAAATGAATTGCCCTCTCTTGCGGTCTGTGTTGTTATTGGAGTTTGGGATAATGTCAAACCTCCTTTCTTTGCGAACTTCAATTTCTTTGTTAAAATCAAGGGTATTTATACATGTGTTTCTTGTTTTCGTTGTGGTAATATAATTTGGATATCTGAAGATAGTCATATAATTATACTCAACCGTCAAAATGATTTTCAACATCCAATGCAACCCCATGTTAAAAGAGCGCTTGAGAAGAATAAGTGGATTTGTGGGGAAGTGTCATTACAGATAGCACCAGAGAAAGATCCAGATAACTTGGGAGTAATCAAATGGACTGGAGTTTATGTAAAACGGGCATTTAGTAGATTGGACAATATTCGGTTCACTAATCCAAATTCCAATAATACAAGTGATGTGGGAAATAAGCTTGTGTTGCTTGGTGAGGCACCTTGTATGCAACAACAACAACCTTTGAATTATGTGTATAGTAATTCAGATCCACAAGAACCAGCACATGACCAAGATGGAGCATTTTTGGGTCATCAAGGTATGGCTCCAAGTTTTGTTGAGACCCAAAGAGAAATGGGAACACTGGTATCAGAAGATTCAAGGGAATTCACTAATCAGAGTAGCGATTTCACTATTGAGTCCACAACATCCAAGTTGCATAAAGATGATGAAGTGGAAGCAGGTTTGGAAACTAAGAAGAGCAAGTTCAGCAAAGCTATGGACTTGGACAATGAGATACACCAAAAGCTAAGCATGATTAAGAAAAGAAAGAGGATTTAG 3399 0.281 MAQEGSSSSSISKYTYDVFLSFRGEDTRYGFTGNLYSALSQRGIFTFIDDEALPKGQEITPSLRKAIQESRMSIVIFSKNYATSTFCLNELVQILECYTKQNMWILPVFYDVDPSHVRHQKGSYEDAFAQHERGRFKDDIQLLQKWKLALSQAADLSGLHFKIGDEYESELIKKITEEISSKLNRPALHIADYPVGLSARMRQIRKLIGAEFDNKVTMIGIHGMGGIGKSTLARAMYNLMAHQFEASYFLANVREKSVQDGLVHIQQNMLSELVSERNIKLGDVYQGIPILQQRLCRKKVLLVLDDINKKEQLQATAGGLDWFGLGSIIIITTRDKHLLDIHGIEKQYEVNEFNDVEALELFRWNAFKNQKVDSDYEEIIKRAIHYADGLPLALETIGSNCFGKTLDEWKSALEAYEGITDRNVQEILRISYDSLDANEKEIFLDIACFFKGCTLRYVTYMLEARGFHPKYGIRVLEEKSLIKICRCHEHVIMHDLIQSMGREIVKQQSNLPKKRNRLWFYEDIVRVLEKNTENDEIEAIMLDVPQDQEVQWNQKVFGKLKNLQMILIKKNNGFLRSFKDLPNNLRVLEWCRYPAATLPSNFHLKNLVVLNLSYSKFGWEKPFENSNILRHLVLRGCENIRRIPNMSGFPNLIELVVGECTNLIEIHDSVGLLHNLQRFCAEGCTKLMFGPRGIKLTALEQLCLRDCSSLVMFPEILAPMHKLKYVDLEGTSINNLPLSMQNLKGLQNLSLGTCKMLDRFDAFKFFQMLPVLFPNLTKLYLKYSNLTILPTCIEECQSLKILHVSNCKKLQEIRGLPSSVTEFFAANTLVEVESFNNLLRRAIDTTSIRISVQPGQRIPKWFDHSTGGNSLRFWFRNELPSLAVCVVIGVWDNVKPPFFANFNFFVKIKGIYTCVSCFRCGNIIWISEDSHIIILNRQNDFQHPMQPHVKRALEKNKWICGEVSLQIAPEKDPDNLGVIKWTGVYVKRAFSRLDNIRFTNPNSNNTSDVGNKLVLLGEAPCMQQQQPLNYVYSNSDPQEPAHDQDGAFLGHQGMAPSFVETQREMGTLVSEDSREFTNQSSDFTIESTTSKLHKDDEVEAGLETKKSKFSKAMDLDNEIHQKLSMIKKRKRI 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00458 1132 SUPERFAMILY "Winged helix" DNA-binding domain 423 529 IPR036390 -
Cca08g00458 1132 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 158 IPR035897 -
Cca08g00458 1132 Pfam NB-ARC domain 210 429 IPR002182 GO:0043531
Cca08g00458 1132 ProSiteProfiles TIR domain profile. 14 183 IPR000157 GO:0007165
Cca08g00458 1132 Gene3D - 181 346 IPR027417 -
Cca08g00458 1132 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 718 IPR044974 GO:0006952
Cca08g00458 1132 Gene3D - 8 180 IPR035897 -
Cca08g00458 1132 Gene3D Ribonuclease Inhibitor 549 693 IPR032675 -
Cca08g00458 1132 Gene3D Ribonuclease Inhibitor 694 833 IPR032675 -
Cca08g00458 1132 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 784 1123 - -
Cca08g00458 1132 Gene3D - 353 436 IPR042197 -
Cca08g00458 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 446 IPR027417 -
Cca08g00458 1132 SUPERFAMILY L domain-like 540 828 - -
Cca08g00458 1132 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 784 1123 IPR044974 GO:0006952
Cca08g00458 1132 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 718 - -
Cca08g00458 1132 Pfam TIR domain 16 184 IPR000157 GO:0007165
Cca08g00458 1132 SMART till_3 15 156 IPR000157 GO:0007165
Cca08g00458 1132 PRINTS Disease resistance protein signature 294 308 - -
Cca08g00458 1132 PRINTS Disease resistance protein signature 387 401 - -
Cca08g00458 1132 PRINTS Disease resistance protein signature 218 233 - -
Cca08g00458 1132 PRINTS Disease resistance protein signature 794 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00458 Cca-Chr8 7437414 7445484 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00458 195 830 WRKY Transcription Factor Family AT5G45050 31.462 2.36e-74 267