Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00454 ATGTACATCGAGGAATTCCAACACTACAAAAAAGACTGTCGAAAGAAAGTCCTTCTTGTTCTTGATGATATTGACAAAAAAGAACAATTACAAGCAACTGCTGGAGGACTGAATTGGTTTGGCCCTGGTAGTATCATCATTATAACAACAAGGGATAAACGTTTGTTAGATACTCATGAAATCAAAAACTTATACGAGGTTGGAAAATTGAATTTTATTCAATCTCTTGAATTGTTTAGATGGAATGCTTTTAAAAACAAAAAAGATGACCCAAATAAAATGGAACTCATAAAGCGTGCATTATATTGTGCCGGTGGCCTTCCTTTGGCTTTGGAAATAATAGGCTCAAACTTTGTGGATAAAACATTAGATGAAGAATGGGATTCTGTGTTAAAAACATATGAGAGATTTCCAAATAGAGATATTCAGGAAATTCTTAGAGTTAGCTATGATAGTTTGGATACTAATGAGAGAGAAATATTTCTTGACATAGCTTGCTTCTTTAGTGGATACACTCTAAGAGATGTTACAAATATGCTTGAGGCAAGAGGCTTTCAACCAAAATTCGGTATTAGAGTGCTTCAAGAAAAATCTCTGATAAATATTGATTCATTTTCTAGAAAATGTAATGATCAAATTATGATAATGCATGACTTGGTTCGATCTATGGGAAAAGAAATGGTTAGAGAACAATCAAATTTTCCAGAGAAAAGAAATAGGTTGTGGTTTTGTGAGGACATTGTTCGTGCTTTGGACAAAAACACGGAAAATGAAATTGAAGTCATGATGTTAGACATGCCAAAAGATCTAAAAGTTCAATGGAATCAAACGGTGTATAGAAAAATGAAAAATCTACAAATGATGCTCGTAAAAAGTAGTGTTGCCTCTCTTAGAATGCCTAAGGATCTCCCAAACAGTTTGAGGGTGCTGGAATGGTGGGGATACCCTGGAGCTTCTTTACCATCTAATTTTCATTTGAAGAATCTTGTCATACTCAACTTGTCATACAGTTGCTTTCGATGGGACAAACCACTTGAGAATTCGAAGATGTTGAGACAGTTGGTTCTTAAAGGTTGTAAGAACATAAGACGAGTTCCAGACATGTCTGGTTTTCCCAATTTGACAGAATTATGTCTCGCTGATTGCACAAATTTGATTAAAATTCATGATTCATTAGGATTTTTACATAATCTTCGATGGTTATGTGCTGAAGGATGTACCAAACTCGTGATTTTCCCACGTCGCATAAAGTTGACATCTCTTGAACATCTTTGCATTAAGGATTGCAGTAGTCTTGTTATGTTGCCCGAAATATTGGCACCAATGCAGAAACTAAAATATGTTGACTTGGACGGAACTTCCATAAAAAATCTGCCACGTTCAATGCAGAATCTTAAAGGCCTTCAAATCTTATCCATGAATAGATGCAAAATGCTTGAAATTAATGGGCGTTCCAATGTCGTTCAAATGCTGCCAAAATTATTTCCCTATTTGAAAGAATTATGGTTAGATGAATCAAGTTTGACAATCATTCCTGCATGCATTGAAGAGTGTCACTCATTGGATTATCTAAGTCTGTATAACTGCAAGAAGCTTCGAGAAATAAGAGGCCTTCCGCCAAACATGACTAGACTCTCGGCAGAAAACAGTCTTGTGGAAGTAGATTCATCAACTTTAAACATGTTAGTCAGACGGGCAATTAATTCTTCTGGAATACGACTATATGCTTTGCCAGGTCATCAGGTCCCAGAATGGTTTGACCACTCTACCTACGGAAACTCTCTACGTTTCTGGTTTCGTAATAAATTGCCATCTTTCACTGTGTGCGGTGGTGTTCTAGGAGTTTGTGAGAATACCGAGCTTCGTTTTGTTTTGAAATTAATTTATTTAGTTAGAATCAATGATGTTCACGTGCGTGTTTCTTCTCCCGCTTCTGTGTATATAGACTGGCGGGATGTTGAGAATGACCATGTATTGATGTTCAATCTTGAAAGTTTTTTTAAGCATCCAATGGATAACCACAGTAGAAGAACAATTAACACAAATGAGTGGATTTATGGGAGTATTTCGTTTGTGATAACACCGTCGGAAAATGATTCACTTAGATTGGAATTAATCAAATGTATTGGAGTTCATGTAAACCGGGCATTTTGTAGAATGGAGGATGTTCGGTTCACAGATCCTTATCCTCCCAATACCAATAATACAAGACATGTGGGAAATCAACTTTTGTTGCCTGGTGAGGAACCTGATATACAAGTAAAGAACCAATCACTAGCATTACTCAAGCCCTATCAAATTGGGGAACAACCTTTGAATTATGAGTCTAGCAATTCAGATTCACAGGTGTGCACTATTCACTATCCAAATGGCCAAGGGTTGTGTTCAGGTTCTGAGAGAACTGAGATTCTGGAAGTCTCAATAGATGAAGCAGCCATCTCATGTCAGAACAAGGAAGTGGTGATGGTTGAAGCTTGTGAGGGTAACAAAAAAAATGATGCTAACATGCAAGATGGTCATCATATGGCAGCAGGAGAATTAGATCAACTAGCAGAAGCATATGCTAATCCCTCTGAGCATCAACATGGAGAAATCATGAAACAAGCTCCTCCAATTTCACAAGATGCAACACCATTTCTGCCACAGTATATTGCTGATTCTGAAACCAAAAGAAAAGCACCAACTTCTGAGATATCAATAGAGAAAGTAGTCAAGAAAATAAGGACAGATCAGGAGATGCTTTTCAATAATGTGGCCACTCTTCAAGAAAGACAGAACCAGTTCTTCCATTGGTTCAACACAGAAGTCTTGCCCATTTTTGCCCCAACAGCAAGACCCTTTCCTTCCACTGGTTCCACTATTTCTTCTGGACAATCTTCACAATCTAAGAAGATTGAGGAAAAAAAGGGAGAAAATTAG 2919 0.3717 MYIEEFQHYKKDCRKKVLLVLDDIDKKEQLQATAGGLNWFGPGSIIIITTRDKRLLDTHEIKNLYEVGKLNFIQSLELFRWNAFKNKKDDPNKMELIKRALYCAGGLPLALEIIGSNFVDKTLDEEWDSVLKTYERFPNRDIQEILRVSYDSLDTNEREIFLDIACFFSGYTLRDVTNMLEARGFQPKFGIRVLQEKSLINIDSFSRKCNDQIMIMHDLVRSMGKEMVREQSNFPEKRNRLWFCEDIVRALDKNTENEIEVMMLDMPKDLKVQWNQTVYRKMKNLQMMLVKSSVASLRMPKDLPNSLRVLEWWGYPGASLPSNFHLKNLVILNLSYSCFRWDKPLENSKMLRQLVLKGCKNIRRVPDMSGFPNLTELCLADCTNLIKIHDSLGFLHNLRWLCAEGCTKLVIFPRRIKLTSLEHLCIKDCSSLVMLPEILAPMQKLKYVDLDGTSIKNLPRSMQNLKGLQILSMNRCKMLEINGRSNVVQMLPKLFPYLKELWLDESSLTIIPACIEECHSLDYLSLYNCKKLREIRGLPPNMTRLSAENSLVEVDSSTLNMLVRRAINSSGIRLYALPGHQVPEWFDHSTYGNSLRFWFRNKLPSFTVCGGVLGVCENTELRFVLKLIYLVRINDVHVRVSSPASVYIDWRDVENDHVLMFNLESFFKHPMDNHSRRTINTNEWIYGSISFVITPSENDSLRLELIKCIGVHVNRAFCRMEDVRFTDPYPPNTNNTRHVGNQLLLPGEEPDIQVKNQSLALLKPYQIGEQPLNYESSNSDSQVCTIHYPNGQGLCSGSERTEILEVSIDEAAISCQNKEVVMVEACEGNKKNDANMQDGHHMAAGELDQLAEAYANPSEHQHGEIMKQAPPISQDATPFLPQYIADSETKRKAPTSEISIEKVVKKIRTDQEMLFNNVATLQERQNQFFHWFNTEVLPIFAPTARPFPSTGSTISSGQSSQSKKIEEKKGEN 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00454 972 MobiDBLite consensus disorder prediction 948 972 - -
Cca08g00454 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 164 IPR027417 -
Cca08g00454 972 Gene3D Ribonuclease Inhibitor 268 416 IPR032675 -
Cca08g00454 972 Gene3D Ribonuclease Inhibitor 417 562 IPR032675 -
Cca08g00454 972 Gene3D - 70 154 IPR042197 -
Cca08g00454 972 Gene3D - 2 63 IPR027417 -
Cca08g00454 972 Pfam NB-ARC domain 14 153 IPR002182 GO:0043531
Cca08g00454 972 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 685 IPR044974 GO:0006952
Cca08g00454 972 PRINTS Disease resistance protein signature 11 25 - -
Cca08g00454 972 PRINTS Disease resistance protein signature 104 118 - -
Cca08g00454 972 PRINTS Disease resistance protein signature 463 479 - -
Cca08g00454 972 SUPERFAMILY "Winged helix" DNA-binding domain 141 251 IPR036390 -
Cca08g00454 972 SUPERFAMILY L domain-like 263 545 - -
Cca08g00454 972 PANTHER ARCHAEAL ATPASE 13 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00454 Cca-Chr8 7267025 7273796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00454 15 536 WRKY Transcription Factor Family AT5G45050 29.432 8.75e-53 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00454 - - ccaj:109793487 1764.2