Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00448 ATGAGATCAAACTCTGAAGCATCACATGTTGGCATGGAGATAGAAGCAACGACTAGGCCTTCAGGGAATGGGACAACAACCCTACCAGGGTTGAGTCCTCTGAGTGAGACCCTTTGGAGAGAGAAGGCCAACACAGAGATCATTGGAGATGTCTCAGCAAGACTCACATGGAAGGATCTCACTGTGATGGTAACTCTCAGCAATGGTGAGACACAAAATGTTCTGGAGGGTCTAACTGGCTATGCTGAGCCAGGAACCTTCACTGCTCTCATGGGACCCTCAGGCTCAGGAAAATCTACACTTCTTGATGCACTTTCTAGTCGTCTAGCTGCAAATGCCTTCCTCTCAGGCACCATCCTCCTCAATGGACGCAAAGCCAAACTCTCTTTTGGCACTGCAGCTTATGTGACACAAGATGACAACTTGATTGGAACCCTAACGGTGCGAGAAACGATTTCATATTCAGCTCGTTTGCGTTTGCCTGATAAGATGCCTAGGGAAGATAAGAGGGCATTGGTTGAGAGCACCATAGTGGCAATGGGTTTGCAAGATTGTGCAGACACAGTGATTGGAAATTGGCACTTGCGTGGGATCAGTGGTGGGGAGAAGAGAAGGGTTAGCATTGCCTTGGAAATCTTGATGAGGCCTAGGTTGCTTTTCCTTGATGAACCAACCAGTGGACTTGACAGTGCTTCAGCTTTCTTTGTGACTCAGACACTACGTGCCTTGGCAAGGGATGGGAGAACAGTTATAGCCTCTATTCATCAGCCAAGTAGTGAAGTGTTTGAGCTGTTTGACCAATTGTACTTGCTTTCTAGTGGCAAAACTGTTTATTTTGGGCAAGCTTCTGAGGCATATGAGTTCTTTGCACAAGCTGGCTTTCCTTGTCCTGCTTTGAGGAACCCTTCAGATCATTTCCTCAGGTGCATCAATTCGGACTTTGACAAAGTCAAGGCCACCCTTAAAGGGTCCATGAAACTCAGGTTTGAGGGAAGTGATGATCCTCTGGACAGGATCACTACTGCTGAAGCTATAAGAACTCTTATTGACTTCTACCGCACTTCTCAGCATTCCTATGCAGCAAGACAAAAAGTGGACGATATATCCAAAGTCAAGGGAACAGTACTTGAAGCTGGAGGAAGTGAGGCTAGTTTCTTGATGCAGTCTTACACCTTAACCAAGCGTTCTTTCATGAACATGTCAAGGGACTTTGGCTACTATTGGCTTAGGCTTGTTATCTATATTGTGGTCACTATCTGTATTGGAACCATTTATTTGAATGTGGGGACAGGCTACAACTCTATTCTGGCTAGGGGTTCTTGTGCATCTTTTGTCTTTGGTTTTGTCACCTTCATGTCAATTGGTGGATTCCCTTCATTTGTTGAAGACATGAAGGTTTTCCAAAGGGAGAGGCTTAATGGTCACTATGGTGTCACTGCATTTGTCATCAGCAACACATTATCTGCCACGCCCTTCCTGATTTTGATCACTTTTCTCTCTGGAACCATTTGTTACTTCATGGTTCGCCTGCACCCTGGCTTTTGGCATTACCTCTTCTTTGTGCTATGCCTTTATGCCAGTGTCACAGTGGTTGAAAGCTTAATGATGGCAATTGCTAGCATTGTACCCAACTTCCTCATGGGCATCATTATTGGAGCAGGGATCCAGGGCATATTCATGTTGGTGTCTGGATACTTTAGGCTCCCACATGATATCCCAAAGCCAGTCTGGCGCTACCCCATGTCATACATCAGTTTCCACTTTTGGGCACTACAGGGTCAGTACCAGAATGATTTGCGAGGCCTGATATTTGACAACCAAACACCAGACCTTCCAAAGATACCAGGCGAATACATATTAGAAAATGTGTTCCAAATTGATGTGAAGAGATCAAAGTGGATAGATTTGAGTGTGatcctcagcatgattatcatctaccgcatcattttcttcatcatgatcaAAGTCAACGAAGATGTGACACCATGGGTGAGAGGGTACATTGCTAGGAGGAGAATGCAGCAGAAGAGTGGAACCCAGAATACAACTATTGCACCTGATGTTCTCACTCAGTCACCATCTCTCAGAACCTATGTGTCATCACAAACAAAATGA 2115 0.4426 MRSNSEASHVGMEIEATTRPSGNGTTTLPGLSPLSETLWREKANTEIIGDVSARLTWKDLTVMVTLSNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNGRKAKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPREDKRALVESTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSSGKTVYFGQASEAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDRITTAEAIRTLIDFYRTSQHSYAARQKVDDISKVKGTVLEAGGSEASFLMQSYTLTKRSFMNMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSATPFLILITFLSGTICYFMVRLHPGFWHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLIFDNQTPDLPKIPGEYILENVFQIDVKRSKWIDLSVILSMIIIYRIIFFIMIKVNEDVTPWVRGYIARRRMQQKSGTQNTTIAPDVLTQSPSLRTYVSSQTK 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00448 704 MobiDBLite consensus disorder prediction 18 33 - -
Cca08g00448 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 292 IPR027417 -
Cca08g00448 704 ProSitePatterns ABC transporters family signature. 198 212 IPR017871 GO:0005524
Cca08g00448 704 Gene3D - 49 293 IPR027417 -
Cca08g00448 704 SMART AAA_5 84 255 IPR003593 -
Cca08g00448 704 PANTHER OS04G0528300 PROTEIN 8 700 - -
Cca08g00448 704 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 55 298 IPR003439 GO:0005524
Cca08g00448 704 Pfam ABC-2 type transporter 255 311 IPR043926 GO:0140359
Cca08g00448 704 CDD ABCG_EPDR 52 280 - -
Cca08g00448 704 Pfam ABC-2 type transporter 388 594 IPR013525 GO:0016020|GO:0140359
Cca08g00448 704 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 8 700 - -
Cca08g00448 704 Pfam ABC transporter 77 226 IPR003439 GO:0005524
Cca08g00448 704 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00448 Cca-Chr8 6987676 6994964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00448 85 286 Calmodulin-binding Proteins AT2G36910 31.100 1.47e-11 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00448 08 6987676 6994964 Cca08g00448 08 6987676 6994964 ECH