Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00440 ATGAGCTTGGCCCTTAACATAAGTTTTTTTTGTGTGGTCATGTTTGTGTCATTCAAATTCAGCATGGTTTTGTGCATTAAAATTGAGGAATTCTACCCAGGAGAAAGAGATGCTTTGATGCTCATAAGGGATTCTTTGAATTCTTCTGTGGATTTGCATGGGAATTGGACGGGTCCTCCTTGTATAGACAATCATAGCAGATGGATTGGCATCACTTGTTCAAATTGGCATGTTGTTCAAATTGTTCTTGAAGGGGTTAACCTTAGTGGTTACTTGCCTCATACATTCCTTCAAAACATAACTTTCTTGAGCCAACTTGACTTCAGAAACAATGCACTTTTTGGACCAGTGCCCAGTCTCAAGAATTTGACGTTTTTGGAACAAGTTTTGCTATCATCCAATCATTTCTCAGGGTCAATTCCTGTGGAGTATGTTGAACTTCCTAGTCTAGAGGTTTTGGAGTTGCAAGAGAATTACTTAGATGGTCAAATTCCACCATTTGATCAAGCATCCTTGACAAGTTTTAATGTGTCATATAATTATCTTTCAGGGCCTATTCCTGAAACTTCTGTGCTGCAACGGTTTCCTGATAGTTCATTCGGTAATAATTCAGGTCTTTGTGGAAAGCCATTGGATAACCCATGTCCTATTGAACCTCCATCTCCATCTCCATTTTATGCACCACCTCCTTTTGTTGTTCCTCCAAGTTCACCAATGGAACCAAATAAGAAGAGGCTTCATGCATGGATTGTTGCTTTGATTGGTGCTGCATCTGCATTTTTTCTACTTTCTCTGATAATTATTATTGCTTTCTTGTTTCTTAAaagaagaagaacaagtggaaaagaaccaagaagGAATGATTCAACAGGGTATGTTTTTGGGGCATGGGCAAAGAAGATGGTGTATTATGCTGGAAACAGTGATGTTTCTGAAAGGATTGGGAAATTGGAATTTTCCAACAAGAAAATGGCAGTTTTTGACTTGGATGATTTATTAAGGGCATCAGCAGAAGTGCTTGGAAGAGGGAACTTAGGCATTACATACAAAGCAACACTTGAAACTGGAAGTGTTGTTGCAGTGAAGAGACTTAACCACGTGAATGAACTGAGCAAGAGGGAATTTCTCCAGCAGATGCAATTGCTAGGACAGATGAAGCATGAAAATCTTGTAGAAATCGTCTCCTTCTATTATTCAGAGGAGCAAAAGCTGGTCATATATGAATTTACCTCTGATGGCTCTTTGTTTGAATTTCTACATGAGGGTAGAGGACTAGGAAGAATACCACTTGATTGGACAAAAAGACTTTCTATAATCAAAGAGATTGCAAAGGGTCTTGCTTTCCTCCATCATTCTTTGCCTCAGCACAAGGTCCCTCATGCCAACCTCAAATCATCCAATGTCCTAATCCATGAAGACAGTAAAGGGTACCATTCCAAGCTCACAGACTATGGTTTCTTGCCTCTACTCCCAGCCAAACAGAATGCAGAAAAGCTAGCCATAAGGAGGTCACCAGAGTTTGTTCAAGGGAAGAGGCTGACACACAAAGCTGATGTTTATTGCTTTGGTATCATCATGCTAGAGATCATAACTGGCAAAATCCCTGGTCATGTCATAGGTGAAATTGAGGAAACAACTAATGATCTTTCAGATTGGGTGAGAACTGTGGTCAACAATGATTGGTCCACAGACATATTGGACTTGGAAATACTAGCAGAAAAAGAAGGGCATGATGCAATGCTGAAGCTGACAGAGTTAGCTCTAGAGTGCACAGATGTGACACCAGAGAAACGGCCTAAGATGAGTGTAGTATTgatgagaatagaagagatagagcaaatgagaaaagagaaTGACTAG 1860 0.3855 MSLALNISFFCVVMFVSFKFSMVLCIKIEEFYPGERDALMLIRDSLNSSVDLHGNWTGPPCIDNHSRWIGITCSNWHVVQIVLEGVNLSGYLPHTFLQNITFLSQLDFRNNALFGPVPSLKNLTFLEQVLLSSNHFSGSIPVEYVELPSLEVLELQENYLDGQIPPFDQASLTSFNVSYNYLSGPIPETSVLQRFPDSSFGNNSGLCGKPLDNPCPIEPPSPSPFYAPPPFVVPPSSPMEPNKKRLHAWIVALIGAASAFFLLSLIIIIAFLFLKRRRTSGKEPRRNDSTGYVFGAWAKKMVYYAGNSDVSERIGKLEFSNKKMAVFDLDDLLRASAEVLGRGNLGITYKATLETGSVVAVKRLNHVNELSKREFLQQMQLLGQMKHENLVEIVSFYYSEEQKLVIYEFTSDGSLFEFLHEGRGLGRIPLDWTKRLSIIKEIAKGLAFLHHSLPQHKVPHANLKSSNVLIHEDSKGYHSKLTDYGFLPLLPAKQNAEKLAIRRSPEFVQGKRLTHKADVYCFGIIMLEIITGKIPGHVIGEIEETTNDLSDWVRTVVNNDWSTDILDLEILAEKEGHDAMLKLTELALECTDVTPEKRPKMSVVLMRIEEIEQMRKEND 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00440 619 SUPERFAMILY L domain-like 32 196 - -
Cca08g00440 619 Gene3D Transferase(Phosphotransferase) domain 1 411 619 - -
Cca08g00440 619 PANTHER POLLEN RECEPTOR-LIKE KINASE 4 10 613 - -
Cca08g00440 619 Gene3D Phosphorylase Kinase; domain 1 303 409 - -
Cca08g00440 619 Gene3D Ribonuclease Inhibitor 33 217 IPR032675 -
Cca08g00440 619 SUPERFAMILY Protein kinase-like (PK-like) 338 608 IPR011009 -
Cca08g00440 619 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 613 - -
Cca08g00440 619 ProSiteProfiles Protein kinase domain profile. 334 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00440 619 Pfam Protein kinase domain 337 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00440 619 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00440 Cca-Chr8 6834787 6837189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00440 35 611 Receptor kinase-like Gene Family AT2G36570 36.207 1.25e-107 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca08g00440 Pkinase 1.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00440 - - gmx:102668068 1001.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00440 08 6834787 6837189 Cca08g00440 08 6834787 6837189 ECH