Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00436 ATGACAATATCAATAATTCAACCATGTATGAAACTTCCATATTACCTCTTTCTTGTTCTGTTCTTCTTCCTTGGCCTCACAGCCTCACAAGCTCAGTTGTATGATCAAGAACATGAAGTTTTGTTGAACATAAAGCAATACCTTAAGAACCCTTCATTCCTCTCTCACTGGACTTCAACTTCCTCTCACTGTACTTGGCCAGAGATCACATGCACCAATGCCTCAGTCACTTCCCTCACCCTCTCCAATCTCAATATCACCCTCACAATACCACCCTTCATCTGTGACCTCACCAACCTCACACACCTTGACTTCAGCTTCAACCTCATCCCTGGTGGCTTCCCCACACCCCTCTACAATTGTTCCAAGTTGGAGTACCTAGACTTGTCCAGGAACAACTTTGATGGCATGGTTCCACATGATATTGACAAATTGGGGGCCAATTTGCAATATCTCAACCTCAGTTCCACCAACTTTGCTGGTGGTGTTCCACCTAGTGTTGGAAAGTTAAAGCAATTGAGAGAGCTTAAGCTTCAGTATTGCCTGTTGAATGGCACTGTTGCTGCTGAGATTGATGATTTGTCCAACCTAGAGTACTTGGACTTGTCCTCCAACTTCATGTTTCCTGAATGGAAGATGCCATGGAACTTGACCAAGTTTAACAAATTGAAGGTGCTTTATCTGTATAGCACCAAATTGGTTGGGGAAATTCCTGAGAGAATTGGGGATATGGTGGCTTTGGAGAAGGTGGATATGTCAAAAAATGGCTTAACTGGTGGAATTCCAATTGGTTTGTTCAAGCTGAAGAATCTTACCACACTGTATCTCTATGCAAATAGTCTTTCTGGGGAAATACCAAGTGTGGTTGAGGCATTGAACCTGGTCAACCTTGATCTTGCAAGGAACAATCTCACAGGGAAAATACCTGATGGTTTTGGAAAGCTGCAACAGTTGTCATGGTTGAGTTTGTCTTTGAATAGCTTGTCAGGTGTGATACCAGAAAGCCTAGGGAATCTTCCAGCTCTCAAGGATTTTCGTGTGTTTTTCAACAAGTTATCAGGTACTCTTCCTACTGATTTTGGCCGTTACTCAAAGCTTCAAACCTTTTTGACTGCATCTAACAATCTTACTGGGAAGTTACCCGAGAACTTGTGCTATAATGGGCTGTTACTTAACTTGTCTGTTTATGATAACAACCTGAGTGGTGAGTTGCCAGAATCACTAGGAAATTGCAGTGGTTTAATGGATCTGAAAATTCACAATAATGAGTTTTCTGGTAACATTCCCAGTGGTATTTGGACATTTCTCAATTTGTCGAATTTCATGGTGAGCCATAATAAGTTCACTGGTGAGCTTCCTGAAAGGCTATCTTGGAATGTTTCAAGGTTTGAGATAGGTTACAATCAGTTTTCTGGTGGAATTCCAAGAGTGTCATTATGGCCTAATTTGGTAGTGCTTGATGCCAGTAAGAACAACTTTAATGGAAGTATTCCACAAGAGCTAACATCTCTTTCTAGGTTAACAACCTTGTTGCTTGATCAGAACCAACTCACTGGGCCACTTCCATCAGACATAATATCATGGAAATCCTTAGTAACTCTAAATTTAAGCCAAAACCAACTCTCTGGACAAATCCCAAATGCAATTGGTCAATTACCTGTCCTTAGTCAACTTGATCTATCAGAAAACGAATTCTCTGGCCAAGTTCCTTATCTACCTCCCAGACTCACCAATTTAAATTTGTCTTTTAATGACTTCACGGGGAGGATTCCAAGGGAATATGACAATTCAGTGTATGCTAGTAGCTTTTTGGGAAATTCTGGCCTTTGTGCTGATACCCCAACACTGAACCTTACCTTGTGCAATTCTGGCCTTCAAAGAAAAAGCAAAGGTTCATCTTGGTCTATTGGTTTGATCATAACCTTGGTGGTAGTGGCCTTGTTACTGGCCCTTTTGGCATCAGTCTTGTTCATTAGATTTCACAGAAAAAGAAAGCATGCATTGGACAACTCATGGAAGCTCATTTCCTTTCAGAGGCTGAACTTCACAGAATCAAGCATTGTCTCATCAATGACTGAACAGAACATTATTGGAAGTGGTGGATATGGTACAGTATACCGCGTTGATGTTGATGATTTTGGCTGTGTTGCTGTGAAAAGGATTAGGAACAACAGAAATTTAGACCAGAAGCTTGAGAGCTCTTTCCGTGCAGAAGTTAGAATACTTGGCAATATTCGGCATACCAACATTGTGAGGTTGATGTGTTGTATCTCTAATGAAGATTCTATGCTACTTGTGTATGAGTATATGGAAAATCACAGCCTAGATAAGTGGCTGCACAAGAACGTTAAGCCATTGGCTGTGTCTGGTGCAGTCAATAAAGTGGCCCTTGATTGGCCAAAGAGGTTGAAAATAGCCATTGGGGTTGCTCAAGGTTTGAGCTACATGCACCATGATTGTTCACCACCTGTTGTTCATAGAGATGTTAAAACAAGCAACATCCTTTTGGATGCTCAATTCAATGCAAAAGTTGCTGATTTTGGACTAGCAAGGATGTTAATCAAGCCAGGGGAACTTAACACCATGTCATCTGTGATTGGCTCATTTGGCTATATTGCTCCAGAATATGTTCAAACAACAAGAGTCAGTGAAAAGATTGATGTGTTTAGCTTTGGGGTAGTCCTATTGGAACTGACAACAGGTAAAGAAGCAAATTATGGAGACCAACACTCATCTCTTTCAGAGTGGGCTTGGCGTCACATTCTCATTGGAAGCAATGTTGAAGAATTGCTAGACAAAGATATCAAGGAAGCCATTAACTTAGATGAAATGTGCACTGTTTTCAAACTTGGGGTCATGTGCACTGCAACACTTCCTGCTACTAGGCCTTCCATGAAGGAGGCACTACAAATATTGCTCACATTAGGTGAACCATATCCTTATGGAGACAAGAATTTTAGCCACTACTATGATGCTATTCCCCTTCTTAAGAATTCAAAAGAGGAACACTAG 3012 0.4107 MTISIIQPCMKLPYYLFLVLFFFLGLTASQAQLYDQEHEVLLNIKQYLKNPSFLSHWTSTSSHCTWPEITCTNASVTSLTLSNLNITLTIPPFICDLTNLTHLDFSFNLIPGGFPTPLYNCSKLEYLDLSRNNFDGMVPHDIDKLGANLQYLNLSSTNFAGGVPPSVGKLKQLRELKLQYCLLNGTVAAEIDDLSNLEYLDLSSNFMFPEWKMPWNLTKFNKLKVLYLYSTKLVGEIPERIGDMVALEKVDMSKNGLTGGIPIGLFKLKNLTTLYLYANSLSGEIPSVVEALNLVNLDLARNNLTGKIPDGFGKLQQLSWLSLSLNSLSGVIPESLGNLPALKDFRVFFNKLSGTLPTDFGRYSKLQTFLTASNNLTGKLPENLCYNGLLLNLSVYDNNLSGELPESLGNCSGLMDLKIHNNEFSGNIPSGIWTFLNLSNFMVSHNKFTGELPERLSWNVSRFEIGYNQFSGGIPRVSLWPNLVVLDASKNNFNGSIPQELTSLSRLTTLLLDQNQLTGPLPSDIISWKSLVTLNLSQNQLSGQIPNAIGQLPVLSQLDLSENEFSGQVPYLPPRLTNLNLSFNDFTGRIPREYDNSVYASSFLGNSGLCADTPTLNLTLCNSGLQRKSKGSSWSIGLIITLVVVALLLALLASVLFIRFHRKRKHALDNSWKLISFQRLNFTESSIVSSMTEQNIIGSGGYGTVYRVDVDDFGCVAVKRIRNNRNLDQKLESSFRAEVRILGNIRHTNIVRLMCCISNEDSMLLVYEYMENHSLDKWLHKNVKPLAVSGAVNKVALDWPKRLKIAIGVAQGLSYMHHDCSPPVVHRDVKTSNILLDAQFNAKVADFGLARMLIKPGELNTMSSVIGSFGYIAPEYVQTTRVSEKIDVFSFGVVLLELTTGKEANYGDQHSSLSEWAWRHILIGSNVEELLDKDIKEAINLDEMCTVFKLGVMCTATLPATRPSMKEALQILLTLGEPYPYGDKNFSHYYDAIPLLKNSKEEH 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00436 1003 Pfam Leucine rich repeat 293 352 IPR001611 GO:0005515
Cca08g00436 1003 Gene3D Ribonuclease Inhibitor 211 477 IPR032675 -
Cca08g00436 1003 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 15 1001 - -
Cca08g00436 1003 Pfam Leucine rich repeat N-terminal domain 36 71 IPR013210 -
Cca08g00436 1003 ProSitePatterns Protein kinases ATP-binding region signature. 697 719 IPR017441 GO:0005524
Cca08g00436 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672|GO:0006468
Cca08g00436 1003 Gene3D Ribonuclease Inhibitor 478 617 IPR032675 -
Cca08g00436 1003 Gene3D Ribonuclease Inhibitor 148 210 IPR032675 -
Cca08g00436 1003 Pfam Leucine Rich Repeat 123 145 IPR001611 GO:0005515
Cca08g00436 1003 Gene3D Transferase(Phosphotransferase) domain 1 770 980 - -
Cca08g00436 1003 SUPERFAMILY L domain-like 46 377 - -
Cca08g00436 1003 SMART serkin_6 691 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00436 1003 Pfam Protein kinase domain 693 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00436 1003 SMART LRR_sd22_2 268 294 - -
Cca08g00436 1003 SMART LRR_sd22_2 97 129 - -
Cca08g00436 1003 SMART LRR_sd22_2 194 219 - -
Cca08g00436 1003 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 15 1001 - -
Cca08g00436 1003 SUPERFAMILY RNI-like 293 590 - -
Cca08g00436 1003 SUPERFAMILY Protein kinase-like (PK-like) 685 973 IPR011009 -
Cca08g00436 1003 Gene3D Ribonuclease Inhibitor 35 147 IPR032675 -
Cca08g00436 1003 ProSiteProfiles Protein kinase domain profile. 691 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00436 1003 Gene3D Phosphorylase Kinase; domain 1 662 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00436 Cca-Chr8 6760762 6764745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00436 31 996 Receptor kinase-like Gene Family AT5G25930 52.254 0.0 951
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca08g00436 Pkinase 4.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00436 - - gmx:100813894 1607.04