Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00434 ATGTCATCCTCAACCTCTCATCAAGTCATCACCTGCAAAGCTGCAGTGGCATGGGGAGCTGGGGAGCCATTGGTGATGGAGGAAGTGCAAGTGAGTCCTCCCCAACAGATGGAGATTAGGATTAAGGTTGTCTCCACCTCTCTCTGTCGCAGTGATCTCTCTGCTTGGGAATCTCATGCCATATTTCCTCGCATATTTGGCCATGAAGCATCAGGGATTGTAGAGAGTGTGGGACTGGGAGTGACTGAATTCAAAGAGGGGGACCATGTGCTAACAGTATTCATTGGAGAATGCATGGCATGCAGGCAGTGCACATCTGGAAAAAGTAACATTTGTCAAGTTTTGGGGTTGGAAAGAAGGGGTTTAATGCATAGTGATCAGAAGACACGATTCTCAGTAAAAGGGAAGCCTGTTTATCATTATTGTGCTGTTTCAAGTTTCAGTGAATATACAGTAGTCCATTCCGGATGTGCAGTGAAAGTTAGCCCTCTTGCTCCTCTCGAGAAAATTTGCCTTCTGAGCTGTGGGGTTGCTGCAGGTTTGGGAGCAGCATGGAATGTTGCTGACGTGTCAAAAGGGTCAACTGTGGTGATTTTTGGTCTTGGAACTGTTGGCCTATCTGTTGCACAAGCTGCCAGACTAAGAGGTGCATCTCGCATAATTGGTGTGGACAACAATCCACAGAAGTGTGAAAATGCTAAAGCTTTTGGGGTAACAGAAGTTGTTGACCCAAATTCCTGTAAAGAACCTATTGCTCAGGTTATCAAGCGCATTACTGATGGTGGGGCAGATTTTTCGTTCGAGTGTGTCGGTGACACTGATATGATAACCACTGCATTGCAGTCATGCTGTGATGGATGGGGTACGGCTGTAACACTTGGTGTGCCAAAGGTGAAGCCTGAGATGTCAGCTCATTATGGACTTCTCCTAATGGGAAGAACATTGAAAGGATCTCTATTTGGAGGATGGAAACCAAAATCTGACTTGCCTTCATTAGTAGAGAAGTATATCAACAAGGAAATCCAGATTGATGACTACATAACACACAATTTGCCATTTGATGACATTAACAAAGCTTTCAATCTCATGAAGGAAGGAAAGTGTCTTCGTTGTGTCATCCACATGCCAAGATAA 1134 0.448 MSSSTSHQVITCKAAVAWGAGEPLVMEEVQVSPPQQMEIRIKVVSTSLCRSDLSAWESHAIFPRIFGHEASGIVESVGLGVTEFKEGDHVLTVFIGECMACRQCTSGKSNICQVLGLERRGLMHSDQKTRFSVKGKPVYHYCAVSSFSEYTVVHSGCAVKVSPLAPLEKICLLSCGVAAGLGAAWNVADVSKGSTVVIFGLGTVGLSVAQAARLRGASRIIGVDNNPQKCENAKAFGVTEVVDPNSCKEPIAQVIKRITDGGADFSFECVGDTDMITTALQSCCDGWGTAVTLGVPKVKPEMSAHYGLLLMGRTLKGSLFGGWKPKSDLPSLVEKYINKEIQIDDYITHNLPFDDINKAFNLMKEGKCLRCVIHMPR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00434 377 CDD alcohol_DH_plants 10 374 - -
Cca08g00434 377 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Cca08g00434 377 Gene3D - 15 370 - -
Cca08g00434 377 Gene3D - 180 318 - -
Cca08g00434 377 SUPERFAMILY GroES-like 5 185 IPR011032 -
Cca08g00434 377 PANTHER ALCOHOL DEHYDROGENASE-LIKE 6 6 375 - -
Cca08g00434 377 PANTHER ALCOHOL DEHYDROGENASE 6 375 - -
Cca08g00434 377 Pfam Zinc-binding dehydrogenase 204 325 IPR013149 -
Cca08g00434 377 Pfam Alcohol dehydrogenase GroES-like domain 38 160 IPR013154 -
Cca08g00434 377 SUPERFAMILY GroES-like 326 374 IPR011032 -
Cca08g00434 377 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 166 339 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00434 Cca-Chr8 6741351 6746868 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00434 15 112 Monolignol Biosynthesis Gene Families AT2G21890 36.190 2.84e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00434 K00001 - gmx:100819938 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00434 08 6741351 6746868 Cca08g00434 08 6741351 6746868 ECH