Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00431 ATGGAACACAAATCGTGTGAGGATTCATCAAAAATCGCTTCGGATTTCAAGTGCGAGAAGGCTCTTCAAGTAGTTGACGAATCCATTGCGTGTCCCACGCCGCAGAAGAACTCTGAACCCTTAACCATCGCATCCAGAGAGGGACAAACTGAGATTCCACAAAAACACTGGACGCTTGCGGAGTTGTTTAGTCACATGAGTTGTTCACTCAGATTGCTGCGTCTGCGTAAAAAGCCTCCAACTTTTCAAAATGTTTCCAGACAAGTTGAAATTCTTTCGAAGAGGAAAATTTCCTATGTCCATCTTGCACAGATGAAGCACATACTCCCTGATGGTATATGTATAGACAAGATTCTTGTTCATGATAAGAAGACCTTGTGTATGGTGCCTGATCTGAACATCATCTTGAGATATGAAGTTGTGGAAGATCACTCTGGTGAATCTGCTGATCTGGCTCTTCGGCGATATTTTAATTCTAGTCTTGTTAATTTCCTTGTTCTTCATCCCGAGGTTGCTGATATTCCAGAAGCCCAACTGCCAGAACCCTTTAACCGAAAAGCTCGTGGTTTGAGTTGCGAAGATTCTCATGTTAAAGACTTTTCATGCCAATCTTTACGTGTAAATTCTTCGACAAAACTTTTGTCAACTTCCAATCAAATTGAAATGTCGGGGAATTTCGAAGTGTATCCATTATTTAGGAGGCGGTTTTCTCGGAAGAATATTGCTGACCAAACAGAAAGGGTTGAGTTTTCATCCACGATAACTTCTTCATCATCTCATGCGTCTGATTGTTTGGATAACCAAGAAAGTGAAAAGGCATTGCAGACAGAAAGGGTTGAGTTTTCATCCACAATAACTTCTCCATCATCTCATGCGTCTGATTGTCTGGATAACCAAGAAAGTGAGAAGGCATTGCAGAAAGGATGTGCACCATTAGCTGATGATGTTGCTAGTCTCAATATGGAAACAGAGCACCATAAGAAATTATTTTCGATGTCTTCTCAACCTAGTGTTGTTAATACCCCAGTACATACTATCGGCCCCCATTCTGTTACTTGCAATAATTCTGAAACCCCAAAGGTGAAAAATATGCCCAGATATGATAGTTTTATGACAGAGACACCTGCCCAGTCGGCACCTGCAAGATTATTGCCCATTTCTGATGTTAAGCCCCGGAACATGTCTACCCAGAAGTCATCATCGTATCATAAGCCAGCAAAAAGAGTGCTTGACTTTACACTCATGGAAGGTAATGATGACTTGGACATTAGTCTAGACAAGCTAGAATCTAGCAGACTTCCGCATGGCTTTCCTGAATCTATTAGAGCATGCTCCGATGATTGCAATTCTTCTGACTCTGTTCCTGTTCTTCAAGAGGCTCACACCCAAAATCAAACCGGTCTAGATACACAGCATAAAAAACATTCACAGTTGCTGGATCTGGTTAAAGTGATTCATTCTATATTTCAATCCGTCAACAGAATCCCAATCACAAAAGAGGAGCTCATGCAGAAAATACTTACCAACAGTTTGGATTTTGTTGATATTAGAGAAGTTGAAGAACGGGTTGAGTCTCTGGAAAAGTTGGTGCCAGATTGGATCCGCAAAAAATCGCTTCTTATTGGAGATATGTACTGCATCAATGAAGACTTAGAGTTGGATTCCGTTGAATCAAGGATTTCCAGCAAGGAGATTGTTTGA 1701 0.4103 MEHKSCEDSSKIASDFKCEKALQVVDESIACPTPQKNSEPLTIASREGQTEIPQKHWTLAELFSHMSCSLRLLRLRKKPPTFQNVSRQVEILSKRKISYVHLAQMKHILPDGICIDKILVHDKKTLCMVPDLNIILRYEVVEDHSGESADLALRRYFNSSLVNFLVLHPEVADIPEAQLPEPFNRKARGLSCEDSHVKDFSCQSLRVNSSTKLLSTSNQIEMSGNFEVYPLFRRRFSRKNIADQTERVEFSSTITSSSSHASDCLDNQESEKALQTERVEFSSTITSPSSHASDCLDNQESEKALQKGCAPLADDVASLNMETEHHKKLFSMSSQPSVVNTPVHTIGPHSVTCNNSETPKVKNMPRYDSFMTETPAQSAPARLLPISDVKPRNMSTQKSSSYHKPAKRVLDFTLMEGNDDLDISLDKLESSRLPHGFPESIRACSDDCNSSDSVPVLQEAHTQNQTGLDTQHKKHSQLLDLVKVIHSIFQSVNRIPITKEELMQKILTNSLDFVDIREVEERVESLEKLVPDWIRKKSLLIGDMYCINEDLELDSVESRISSKEIV 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00431 566 MobiDBLite consensus disorder prediction 251 299 - -
Cca08g00431 566 PANTHER EXPRESSED PROTEIN 3 562 - -
Cca08g00431 566 Coils Coil 516 536 - -
Cca08g00431 566 SUPERFAMILY "Winged helix" DNA-binding domain 47 183 IPR036390 -
Cca08g00431 566 Gene3D - 468 565 IPR038090 -
Cca08g00431 566 SMART CDT1_2 52 181 IPR014939 -
Cca08g00431 566 Pfam DNA replication factor CDT1 like 53 112 IPR014939 -
Cca08g00431 566 MobiDBLite consensus disorder prediction 277 295 - -
Cca08g00431 566 Pfam DNA replication factor Cdt1 C-terminal domain 463 537 IPR032054 -
Cca08g00431 566 PANTHER DNA REPLICATION FACTOR CDT1 3 562 IPR045173 GO:0003677|GO:0030174|GO:0071163
Cca08g00431 566 CDD Cdt1_m 34 184 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00431 Cca-Chr8 6678362 6682942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00431 478 560 Core DNA Replication Machinery Family AT2G31270 40.476 1.22e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00431 K10727 - gmx:102670055 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00431 08 6678362 6682942 Cca08g00431 08 6678362 6682942 ECH