Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00427 ATGAACTACGCATCCTTGCAAAGAACACTGCACAGTTGTGCAAGCCTGGACCAGCTTAAGCGAATCCATGCGCAGTGTGTGACACTAGGATTCCTAAACTTCCGAAATGTCCAACAAACTTTGTCATGCAGGTTGCTTCAAAGTTACAAGAATGTTGGAAAAACAGAAGAAGCAGAGAGGGTCTTCAATCAGATTAAGGGTCCAGATATAGTATCATGGACATGCCTCCTCAACCTCTACCTTCATTCTGCTTTATCCTCTTGTGGGCACTGCAAGGATTTGGTTAGAGGGAGGGTTGTTCACGGAATGGTGTTGAGGAATTGTTTGGATGAAAACCCAGTTGTGGGTAATGCTTTGATCGACATGTACTGTAGAAATGGGGTGATGGGAATGGCTACTTTGGTTTTTGAGAAGATGGGGTTCAAGGATGTGTTTTCTTGGACTAGTTTGCTCAATGGGTACATGTTGTGTAACAATCTGAATTGTGCCCGTGAAGTGTTTGATGCAATGCCTGAGAGAAATTTGGTTTCTTGGACGGCTATGATTACTGGATGTGTCAAGGGAGGAGCTCCAATTCAGGCTTTTGAGATGTTTAAGCGGATGGGAGCTGATGATGGAGGACCTCGTCTTTGTGCGGATTTGATCGTGGCGGTGCTCTCGGCATGTGCTGATGTTGGGGCTCTTGATTTTGGTCAGTGTTTACATGGTTGTGTTAAGAAGATGAGCCTGGAGCTGGATGTTGCAGTGAGCAATGCTATGATGGATATGTACTCCAAAAGTGGAAGGCTTGACTTAGCTGTAAGGATATTTGATGAGATCTTGAAGAAGGATGTGTTTTCATGGACTACAATGGTATCAGGGTATGCTTATCATGGGGAAGGGCACCTTGCTTTGGAGGCATTTTCTCGGATGTTAGAATCAGGGGTTACCCCAAATGAGGTAACCATGTTGTCAGTTTTAACTGCTTGTAGCCATGCTGGATTAGTTGTGGAGGGAAAAGTGTTGTTCAATAGAATGATTCAGTGCCATTATATGAAGCCGAAGATTGAGCATTATGGATGCATAGTGGATCTTCTTGGCCGCGCTGGATTTCTGGAAGATGCAAAAGAAGTGATTGAGATGATGCCAATTAACCCGGATGCTACTATATGGAGATCATTACTCACTGCTTGCTCTGTTCATGGGAATTTGAGCTTGGCTCAAATAGCAGGAAAGAAGGTAATTGAAATTGAACCAAATGATGGTGGAGTTTATATGCTTTTATGGAATATGTATTGTGTTGCTAATATGTGGAAGGAGGCCTCAGAGATAAGGAAGTTGATGAAGGAAGGGAGGGTCAAAAAAAGGCCCGGGTGTAGTGTGGTCGATGTTAATGGTGTTGTTCAAGAATTCTTTGCTGAAGACACATTGCTTCAAGTTAGTGCAGAGCTTTGCCACTTGCTAAAAAGAATCAAGGAGCACTCATAA 1467 0.4342 MNYASLQRTLHSCASLDQLKRIHAQCVTLGFLNFRNVQQTLSCRLLQSYKNVGKTEEAERVFNQIKGPDIVSWTCLLNLYLHSALSSCGHCKDLVRGRVVHGMVLRNCLDENPVVGNALIDMYCRNGVMGMATLVFEKMGFKDVFSWTSLLNGYMLCNNLNCAREVFDAMPERNLVSWTAMITGCVKGGAPIQAFEMFKRMGADDGGPRLCADLIVAVLSACADVGALDFGQCLHGCVKKMSLELDVAVSNAMMDMYSKSGRLDLAVRIFDEILKKDVFSWTTMVSGYAYHGEGHLALEAFSRMLESGVTPNEVTMLSVLTACSHAGLVVEGKVLFNRMIQCHYMKPKIEHYGCIVDLLGRAGFLEDAKEVIEMMPINPDATIWRSLLTACSVHGNLSLAQIAGKKVIEIEPNDGGVYMLLWNMYCVANMWKEASEIRKLMKEGRVKKRPGCSVVDVNGVVQEFFAEDTLLQVSAELCHLLKRIKEHS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00427 488 TIGRFAM PPR: pentatricopeptide repeat domain 145 175 IPR002885 -
Cca08g00427 488 TIGRFAM PPR: pentatricopeptide repeat domain 279 313 IPR002885 -
Cca08g00427 488 TIGRFAM PPR: pentatricopeptide repeat domain 251 278 IPR002885 -
Cca08g00427 488 Pfam PPR repeat 145 174 IPR002885 -
Cca08g00427 488 Pfam PPR repeat 176 201 IPR002885 -
Cca08g00427 488 Pfam PPR repeat 117 139 IPR002885 -
Cca08g00427 488 Pfam PPR repeat 45 66 IPR002885 -
Cca08g00427 488 Pfam PPR repeat 351 375 IPR002885 -
Cca08g00427 488 Pfam E motif 394 455 IPR046848 -
Cca08g00427 488 Gene3D Tetratricopeptide repeat domain 294 485 IPR011990 GO:0005515
Cca08g00427 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 276 IPR002885 -
Cca08g00427 488 PANTHER OS02G0116100 PROTEIN 83 487 - -
Cca08g00427 488 Gene3D Tetratricopeptide repeat domain 8 141 IPR011990 GO:0005515
Cca08g00427 488 Gene3D Tetratricopeptide repeat domain 142 230 IPR011990 GO:0005515
Cca08g00427 488 PANTHER OS02G0116100 PROTEIN 9 82 - -
Cca08g00427 488 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 83 487 - -
Cca08g00427 488 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 9 82 - -
Cca08g00427 488 SUPERFAMILY TPR-like 256 437 IPR011990 GO:0005515
Cca08g00427 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Cca08g00427 488 Pfam PPR repeat family 276 324 IPR002885 -
Cca08g00427 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00427 Cca-Chr8 6660203 6661750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00427 5 485 Glycoside Hydrolase AT3G49170 31.731 1.18e-88 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00427 - - gmx:102666130 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00427 08 6660203 6661750 Cca11g01755 11 42168932 42173144 ECH
Cca08g00427 08 6660203 6661750 Cca08g00427 08 6660203 6661750 ECH