Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00401 ATGTCTTCTGCcggcggcgacggtgacggcgacggcggcgTTACCTCCGGCGACCCTCGCCAATACTTCTGCCACCAGTGCGACCGCACCGTCTCCGTTTCCCCTTCCCCCTCCACCGATCTCCTCTGCCCCGATTGCAACGGCGGCTTCCTCGAAGAGCTCGAAATCCCTAACCCTAACCCTAACCCTCCCAATCCATTCTTCTCCGACTTCCCCCTCGCCGGCGCCACCTCCTTTCCCCTCGTCCTCCCCGGCACCGCCTCGCCCTTCGACGATCTCTCCGCCCTCTTCGGCGCCCGATCCGACGCTGCCACCGGCGACGCCTTCGAACCCCTCGTCTTCCTCCAGAACTACTTCCAAACCCTCAGAGCCGGCGGCGCCAACCTCCAGCTCGTCATCGAGTCCGGCGACCCCGCCGGAGCGCTCCGATTCCCCGGCAACGCCACCCACGGCGACTACTTCTTCGGGCCTGGCCTCGAGGAGCTGATCCAGCACCTCGCCGAGAACGATCCCAACCGCTACGGCACCCCGCCGGCCTCAAAGTCCGCCGTCGAGGGGCTGCCGGACGTCACCGTCACGGAGGAGCTGCTGGCGTCGGACTCGGCGCAGTGCGCTGTGTGCAAAGACACCTTCGGACTCGGCGAGACCGCCAAGCAGATGCCGTGTAAGCATATATATCACGCGGATTGCATTTTGCCATGGTTGGAATTGCATAATTCTTGTCCCGTTTGTCGCTATGAGTTGCCCACAGATGATCCTGATTACGAGCAGAGGGCTCGTCGCGGTGGCGGCAGCAGCGGTGGCGGTGTTGCTGGTGGGCCGGCTCCCCAGGTGAATTGGAACTTGGCTGGTGGTTCTGCTGATTtggctggtggcagtggcggtagcggtggcggcggtggtgATAATTTGCAGCGGAGGAGGTTTAGGGTGTCTATGCCTTGGCCGTTTAGGCAACTTGTTTCTTCTGCTGCTGAGACGAGTAATGTTGGGAATGCcaacaatgatagcaacaataacaacagcagtaacaccaaTAGTGGGGACAATGGTAGGCAATTGAATTCTGGAAACAGGGGGAATCAGAATTTTGAGTCGGAGACCAGACAGGAAGATCTCGACTGA 1125 0.5476 MSSAGGDGDGDGGVTSGDPRQYFCHQCDRTVSVSPSPSTDLLCPDCNGGFLEELEIPNPNPNPPNPFFSDFPLAGATSFPLVLPGTASPFDDLSALFGARSDAATGDAFEPLVFLQNYFQTLRAGGANLQLVIESGDPAGALRFPGNATHGDYFFGPGLEELIQHLAENDPNRYGTPPASKSAVEGLPDVTVTEELLASDSAQCAVCKDTFGLGETAKQMPCKHIYHADCILPWLELHNSCPVCRYELPTDDPDYEQRARRGGGSSGGGVAGGPAPQVNWNLAGGSADLAGGSGGSGGGGGDNLQRRRFRVSMPWPFRQLVSSAAETSNVGNANNDSNNNNSSNTNSGDNGRQLNSGNRGNQNFESETRQEDLD 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00401 374 CDD RING-H2_RNF126_like 203 245 - -
Cca08g00401 374 MobiDBLite consensus disorder prediction 328 364 - -
Cca08g00401 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 251 IPR013083 -
Cca08g00401 374 SUPERFAMILY RING/U-box 189 251 - -
Cca08g00401 374 MobiDBLite consensus disorder prediction 328 374 - -
Cca08g00401 374 SMART ring_2 204 244 IPR001841 -
Cca08g00401 374 ProSiteProfiles Zinc finger RING-type profile. 204 245 IPR001841 -
Cca08g00401 374 Pfam Ring finger domain 203 245 IPR001841 -
Cca08g00401 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 13 329 - -
Cca08g00401 374 MobiDBLite consensus disorder prediction 255 305 - -
Cca08g00401 374 Pfam zinc-ribbon 21 54 IPR039525 GO:0061630
Cca08g00401 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 13 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00401 Cca-Chr8 6104100 6110144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00401 145 260 C3H Transcription Factor Family AT5G01980 51.724 1.49e-34 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00401 - K11982 gmx:100784504 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00401 08 6104100 6110144 Cca08g00401 08 6104100 6110144 ECH