Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00397 ATGAACGGAAAAGCCTCCGTTTCCAAGGAGCTCCACGCCAGGCACACCAAGATATTGGAGGGACTTGTTAAGCTACCTGACAACAGGGAATGTGCAGACTGCAGGACCAAGGCACCACGGTGGGCAAGTGTGAACTTAGGGATATTCATTTGCATGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACATTGGATACATGGTTGCCAGATCAAATTTCTTTTATGCAATCAATGGGTAATGTGAGGTCAAATAAGCACTGGGAGGCACAATTACCGCCAAACTTTGACAGAAATGGATATGGAATTGAGAAATTTATTCGTTCCAAGTATGTGGAGAAAAGATGGGCTTCGGAAGGTGGACCACAACCAGCTTCTAAAGCTGAGATAATCTTCAACTCGAATGCATCTGCTGGGGCTAGGAGTGCTAATCCAAGGAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAACCACATGTCACATATTCGGCCTCCGATAACAAAACCTCATGAGGTCTCCTCAGACTTGCCACAGATGATTTCACCACAATTAAGGAGGCCATCTGCATCATTTGATTTTGACAACCCCAGGGTAAAGAACAATGATACAGTTGATCTTTTTGGCATGCTTTCCATCCATGACGATAAAAAGAATTTCTCAACTACACCTCCTAGCTGGACAACATTTGATTGA 723 0.4412 MNGKASVSKELHARHTKILEGLVKLPDNRECADCRTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQISFMQSMGNVRSNKHWEAQLPPNFDRNGYGIEKFIRSKYVEKRWASEGGPQPASKAEIIFNSNASAGARSANPRNRRLSLEESILVNHMSHIRPPITKPHEVSSDLPQMISPQLRRPSASFDFDNPRVKNNDTVDLFGMLSIHDDKKNFSTTPPSWTTFD 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00397 240 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 240 - -
Cca08g00397 240 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Cca08g00397 240 SMART arf_gap_3 5 132 IPR001164 GO:0005096
Cca08g00397 240 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 240 IPR044520 GO:0005096
Cca08g00397 240 CDD ArfGap 19 119 - -
Cca08g00397 240 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Cca08g00397 240 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Cca08g00397 240 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Cca08g00397 240 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Cca08g00397 240 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
Cca08g00397 240 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00397 Cca-Chr8 6070061 6074099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00397 22 119 C2H2 Transcription Factor Family AT4G05330 49.038 3.79e-27 105
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00397 08 6070061 6074099 Cca08g00397 08 6070061 6074099 ECH