Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00393 ATGGCTGATGGTCATGAGACTGACAAGAACATTGAGGTGTGGAAAATCAAGAAATTGATCAAAGCTCTTGAGGCTGCTAGAGGAAATGGGACAAGTATGATTTCCCTTATCATGCCCCCACGTGATCAAATATCTCGTGTCACCAAGATGCTTGGGGATGAGTTTGGAACTGCATCAAACATCAAGAGCAGGGTGAATCGACAGTCTGTGCTTGGTGCAATCACTTCTGCTCAGCAGAGGCTTAAGCTCTATAACAAGGTTCCTCCAAATGGGCTTGTTCTGTATACTGGCACAATTGTAACTGAAGATGGGAAGGAGAAGAAGGTGACTATTGATTTTGAGCCTTTCAGACCTATTAATGCATCTCTCTATCTCTGTGACAATAAGTTTCATACTGAAGCTTTAAATGAGCTCCTGGAGTCTGATGACAAGTTTGGATTTATTGTTATGGATGGAAATGGTACCTTGTTTGGTACCTTGAGTGGTAATACAAGGGAGGTGCTTCATAAATTCAGTGTGGATCTCCCAAAGAAACATGGAAGAGGAGGGCAATCAGCTCTACGTTTTGCCCGTCTTCGAATGGAGAAGCGTCATAACTATGTGAGGAAGACGGCAGAGCTTGCTACCCAATTCTATATCAATCCTGCCACCAGCCAACCTAATGTTTCTGGATTAATACTGGCTGGTTCAGCTGATTTCAAAACTGAGCTTAGTCAGTCAGATATGTTTGATCCTCGACTTCAGGCAAAAATACTTAATGTTGTTGATGTCTCATATGGAGGAGAGAATGGGTTTAATCAGGCTATTGAACTATCTGCTGAAATTCTGTCCAATGTGAAGTTTATCCAGGAGAAGCGTTTGATTGGAAAATACTTTGAGGAAATCAGTCAGGATACTGGAAAGTATGTTTTTGGGGTTGATGATACTTTAAAAGCTTTGGAGATGGGAGCTGTTGAGACGCTTATTGTCTGGGAAAATCTGGATATGAATAGGTTTGTCTTGAAAAATAGTGCTACTGGTGAGATTGTCATTAAGCACTATAACAAGGAACAGGAGGCCAACCAAAGCAATTTTCGGGATCCTGTGAGCTCTGCTGATTTTGAGGTTCAGGAAAAAATGTCGCTGCTGGAGTGGTTTGCGAATGAATACAAAAGGTTTGGTTGCACTCTTGAGTTTGTCACCAACAAATCACAAGAAGGCTCACAGTTCTGCAGAGGTTTTGGTGGGATAGGTGGGATATTGCGTTACCAGCTTGATATGCGAACATTTGATGATTTCTCTGATGATGGAGTCAAAATACCTGCACCAGTATGGGAGGTGGTTGCACTtgctgctgctgctgctcctcctcctccatgtctgtctgtggtgttgcAAAGAATGCTTGATTGTGAAACCAGATCCTTTGCCTCCAAACTGCCTCCTTCTGATATGAGTTACTTTCGCACTTGTTCTCGTATTTTTCACACACTGGCGCAACAAATTTCTGCGGAGTTTCTGACAACTGCTCCCCTGCTCTTTGCTACTTACACCCAGAAAGACAAGTACAAGCACATGTTCCCCAAAGAAACACAACCTAGAGTCAATGAAGGTGAATCCAGATGCTTCTTCTTACGTGGTGTCTTCTAA 1629 0.4113 MADGHETDKNIEVWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWENLDMNRFVLKNSATGEIVIKHYNKEQEANQSNFRDPVSSADFEVQEKMSLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRTFDDFSDDGVKIPAPVWEVVALAAAAAPPPPCLSVVLQRMLDCETRSFASKLPPSDMSYFRTCSRIFHTLAQQISAEFLTTAPLLFATYTQKDKYKHMFPKETQPRVNEGESRCFFLRGVF 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00393 542 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 431 IPR004403 GO:0003747|GO:0006415
Cca08g00393 542 Pfam eRF1 domain 1 18 138 IPR005140 -
Cca08g00393 542 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 1 431 - -
Cca08g00393 542 SUPERFAMILY Translational machinery components 142 276 - -
Cca08g00393 542 Pfam eRF1 domain 3 281 418 IPR005142 -
Cca08g00393 542 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
Cca08g00393 542 SMART eRF1_1_2 4 140 IPR005140 -
Cca08g00393 542 SUPERFAMILY L30e-like 278 420 IPR029064 -
Cca08g00393 542 Pfam eRF1 domain 2 144 277 IPR005141 -
Cca08g00393 542 Gene3D eRF1 domain 2 136 277 IPR042226 -
Cca08g00393 542 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 13 417 IPR004403 GO:0003747|GO:0006415
Cca08g00393 542 Gene3D - 279 432 IPR029064 -
Cca08g00393 542 Gene3D eRF1 domain 1 2 135 IPR024049 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00393 Cca-Chr8 6026357 6029427 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00393 1 431 Eukaryotic Initiation Factors Gene Family AT3G26618 90.487 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00393 K03265 - gmx:100785916 830.476