Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00379 ATGGGTCTCCTCAGGCGCTTCGGAGATTTTTCGGTCAGGTGGCCATGTTGTCAGCCGCGGTCGCACGTTCGATGCGGCATGGTTGTCGAAGCCGCCGGCTTGGACGATGGCGGTGCACGCGCGCGAAAGTCGTGGTCGTCACCCGCGCGATTCTCCAGCCGATCTTCGAGAGAAAACACACTCTTCTCTCTCTATCCCTCACTTCTCTTCTTCCTTCTTCACTCCACTCCCCACTTTCGCCCTTCTAACTCAGGGTTTTCATCATGGTCAGAAAGAGGAGAACTGAAGCACCCAGTGGGGGTGAAAGCTCTGAGGCCCAACGCCCCGCTGAAAGGAGTGCTCCACCTCAACAGCAGACCCCTACCACAGGAGGGCCTGGACCTCAAGGAGGAGGTAGAGCCTGGGGTCCCCAAGGAGGCCGGGGAGGTTACAGTGGGGGCCGGGGCCGAGGGATGCCCCAACAGCAATATGGTGCCCCTTCTGATTACCAAGGTAGGGGAAGGGGAGGCCCTCCTCAGCAAGGAGGCCGGGGAGGATATGGCGGGGGCCGCGGTGGGGGGGCCACCGGCACCCGAGCTGCACCAAGCAACCTTAGTTCCATCATATCAAACTGGGGTGACTCCTCAACCTGCACCATCATCTGAGGCCAGTTCTTCTCTGCCACCAGAACCCATTGATTTGGAACAATCAATGGCGCAGATGGTGGTTCATGAAGCTACTCCTGCTCCTCCTCCTGCAAGTAAATCGTCGATGAGGTTTCCTCTCCGACCTGGGAAGGGTAGCTATGGCATCAAATGTATCGTCAAGGCTAATCATTTCTTTGCCGAGTTACCAAACAAAGATCTTCATCAATATGATGTAACAATCACTCCTGAAGTGACTTCAAGAGGTGTAAACCGTGCTGTTATGGAGCAGTTGGTGAAGCTGTACCGGGAATCTCACTTGGGCAAGAGACTGCCTGCTTATGATGGACGCAAGAGCCTGTATACTGCTGGTCCTCTCCCTTTCCTTTCAAAGGAATTTAGAATTACTCTCGTTGATGATGATGAAGGAGCTGGAGGACAAAGGAGGGACAGGGAGTTCAAAGTTGTGATCAAATTGGCTGCACGAGCAGATCTTCACCATTTAGGATTGTTTTTACAGGGAAGACAAACTGATGCTCCTCAAGAGGCGTTGCAGGTCCTTGACATTGTTCTGCGTGAACTCCCTACTACAAGATATTGTCCTGTTGGGAGATCATTTTATTCACCTGATTTGGGTAGGAGACAACCTTTAGGTGATGGATTGGAAAGCTGGCGTGGATTCTATCAGAGTATTCGTCCTACACAGATGGGACTGTCACTGAATATTGATATGTCCTCCACTGCATTTATTGAGCCACTGCCAGTAATTGATTTCGTGACTCAACTGCTGAATCGGGATGTATCAACTCGGCCACTGTCTGATGCTGATCGAGTGAAGATTAAGAAAGCTCTCCGAGGTATCAAAGTTGAAGTAACACATCGTGGAAACATGAGAAGAAAATATCGAATCTCTGGTCTGACATCACAGGCAACTCGAGAGTTGACATTCCCTGTTGATGAAAGGGGTACAATGAAATCTGTTGTGGAATACTTCTATGAGACATATGGGTTTGTCATTCAACATACTCAATGGCCTTGTCTGCAAGTGGGCAACACACAAAGGCCAAACTATTTGCCTATGGAAGTTTGCAAGATAGTGGAAGGTCAAAGGTACTCAAAGAGGTTGAATGAGCGACAGATTACTGCTCTGCTGAAAGTTACATGCCAGCGCCCTGTTGAGAGGGAGCGTGATATCATGCAGACTGTGCACCACAATGCATATCATGATGATCCTTATGCTAAGGAGTTTGGAATCAAAATTAGTGAGAAGCTTGCTCAAGTTGAAGCACGCATCCTTCCTGCTCCTTGGCTCAAATATCATGATACAGGTAGAGAAAAGGATTGTCTTCCACAAGTTGGTCAATGGAATATGATGAACAAGAAAATGGTGAATGGGGGGACAGTTAACAACTGGTTCTGCGTAAACTTTTCAAGGAATGTTCAAGATACTGTTGCCCGTGGCTTTTGCTATGAACTTGCCCAGATGTGTTATATATCGGGCATGGCATTTAATCCTGAGCCAGTGGTTCCCCCAGTCAGTGCTCGCCCTGATCAAGTGGAAAAGGTATTAAAAACCCGCTATCATGATGCCAAAAACAAACTGCAGGGAAGGGAGCTTGATTTGCTCATTGTTATTTTGCCTGATAACAATGGATCTCTTTATGGTGACCTTAAACGTATATGTGAGACAGATCTTGGGCTTGTATCACAATGTTGCTTAACTAAGCATGTATTCAAAATGAGCAAGCAGTACCTTGCAAATGTTGCCTTGAAAATTAATGTCAAGGTTGGGGGAAGGAACACTGTACTTGTTGATGCCCTCTCACGCCGCATTCCTTTGGTGAGTGACAGGCCCACAATTATCTTTGGTGCTGATGTTACTCATCCACATCCTGGGGAAGATTCAAGCCCATCCATAGCAGCTGTTGTGGCATCCCAAGATTATCCTGAAATTACCAAATATGCTGGTTTAGTTTGTGCCCAAGCACATAGGCAGGAACTCATTCAAGATCTTTTCAAACAATGGCAAGATCCAGTCAGAGGAACTGTAACTGGCGGAATGATCAAGGAACTGCTTATATCTTTTAGGAGGGCTACAGGACAGAAGCCACAGCGCATCATATTTTACAGGGATGGTGTGAGTGAGGGGCAGTTTTATCAAGTTCTATTGTTTGAACTTGATGCTATTAGAAAGGCTTGTGCATCCCTTGAACCCAACTATCAGCCTCCTGTGACCTTTGTTGTGGTTCAAAAGCGTCATCACACAAGGCTCTTTGCCAGCAACCATCATGACAAGAGTTCGGTTGACAGGAGTGGAAACATATTGCCAGGCACAGTTGTAGACTCCAAAATCTGCCATCCTACCGAGTTTGACTTTTATCTTTGCAGCCATGCTGGAATACAGGGAACAAGTAGGCCAGCTCACTATCATGTTTTGTGGGATGAAAACAATTTCACTGCTGATGCTTTACAAACTCTCACAAACAACCTGTGCTACACATATGCTCGATGCACGAGATCTGTTTCAATTGTTCCTCCTGCATATTATGCACATTTGGCTGCTTTTCGGGCAAGGTTTTATATGGAGCCGGAAACTTCGGACAGCGGCTCTATGACAAGTGGGGCTGTTGCTGGCCGAGGAATGGGTGGTGGTGGTGGACTTGGCCGGAGCACCCGAGCACCTGGTGCTAGTGCCGCTGTGCGTCCGTTGCCTGCTCTTAAGGAGAATGTCAAAAGAGTTATGTTCTACTGTTAA 3378 0.4787 MGLLRRFGDFSVRWPCCQPRSHVRCGMVVEAAGLDDGGARARKSWSSPARFSSRSSRENTLFSLYPSLLFFLLHSTPHFRPSNSGFSSWSERGELKHPVGVKALRPNAPLKGVLHLNSRPLPQEGLDLKEEVEPGVPKEAGEVTVGAGAEGCPNSNMVPLLITKVGEGEALLSKEAGEDMAGAAVGGPPAPELHQATLVPSYQTGVTPQPAPSSEASSSLPPEPIDLEQSMAQMVVHEATPAPPPASKSSMRFPLRPGKGSYGIKCIVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLVDDDEGAGGQRRDREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGDGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSTRPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVHHNAYHDDPYAKEFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWFCVNFSRNVQDTVARGFCYELAQMCYISGMAFNPEPVVPPVSARPDQVEKVLKTRYHDAKNKLQGRELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDYPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDKSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVAGRGMGGGGGLGRSTRAPGASAAVRPLPALKENVKRVMFYC 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00379 1125 Pfam PAZ domain 465 590 IPR003100 GO:0005515
Cca08g00379 1125 PANTHER PROTEIN ARGONAUTE 1A 167 1124 - -
Cca08g00379 1125 SUPERFAMILY Ribonuclease H-like 735 1070 IPR012337 -
Cca08g00379 1125 SMART Piwi_a_2 749 1070 IPR003165 GO:0003676
Cca08g00379 1125 Pfam Mid domain of argonaute 658 733 IPR032473 -
Cca08g00379 1125 Pfam Argonaute linker 1 domain 409 459 IPR014811 -
Cca08g00379 1125 Pfam N-terminal domain of argonaute 266 399 IPR032474 -
Cca08g00379 1125 Pfam Argonaute linker 2 domain 601 647 IPR032472 -
Cca08g00379 1125 Gene3D - 639 812 - -
Cca08g00379 1125 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 167 1124 - -
Cca08g00379 1125 SUPERFAMILY PAZ domain 267 611 IPR036085 GO:0005515
Cca08g00379 1125 SMART PAZ_2_a_3 465 597 IPR003100 GO:0005515
Cca08g00379 1125 SMART DUF1785_2 408 460 IPR014811 -
Cca08g00379 1125 Gene3D paz domain 454 579 - -
Cca08g00379 1125 MobiDBLite consensus disorder prediction 203 224 - -
Cca08g00379 1125 Pfam Glycine-rich region of argonaut 180 239 IPR024357 -
Cca08g00379 1125 Pfam Piwi domain 750 1069 IPR003165 GO:0003676
Cca08g00379 1125 ProSiteProfiles PAZ domain profile. 461 575 IPR003100 GO:0005515
Cca08g00379 1125 CDD Piwi_ago-like 619 1069 IPR045246 -
Cca08g00379 1125 Gene3D - 818 1125 IPR036397 GO:0003676
Cca08g00379 1125 ProSiteProfiles Piwi domain profile. 749 1070 IPR003165 GO:0003676
Cca08g00379 1125 CDD PAZ_argonaute_like 460 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00379 Cca-Chr8 5819741 5838690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00379 191 1125 Eukaryotic Initiation Factors Gene Family AT1G48410 83.121 0.0 1626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00379 K11593 - gmx:100780375 1803.88