Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00378 aTGTCACCAGTTGGATTACCACCTGGCTTTAGGTTCCATCCAACCGATGAAGAGCTTGTCAACTATTATCTCAAGAGGAAGATCAATGCCCAAGAAATTGAACTTGATATCATTCCTGAAGTTGATCTCTACAAATGTGAACCATGGGAATTAGCAGAGAAATCATTTTTGCCAAGTAGAGACCCAGAGTGGTATTTTTTTGGACCCCGGGATAGGAAATACCCCAATGGGTTTAGGACAAATAGAGCAACTCGTGCAGGGTACTGGAAGTCCACTGGGAAAGACAGAAGAGTCTCATGCCAAAGCAGACCTATTGGTATGAAGAAGACTTTGGTGTACTATAAAGGCAGAGCCCCTCAAGGGATCAGAACTGACTGGGTTATGCATGAGTATCGCCTTGATGACAAAGAGTGTGAGGACACCACTGGATTACAGGATACTTATGCATTGTGCCGTGTGTTCAAGAAAAATGGAATCTGTTCTGATATTGAAGAACAACAAGGACAATGTAGTATATCACTAATTGAGTGCTCCCAAACCATTATTAATGAGTGTGAAACCATGTCTCCTGACATACCAGGGGCATCATCTTCATGCTTGGAAGAGGAAGACAAAGATGATTCATGGATGCAGTTCATCACAGATGATGCATGGTATTCCTCTAATGCAGCTATGATTGGTGGTGAAGAAGTCTCACATGTTACATTTACAAACTAA 717 0.4198 MSPVGLPPGFRFHPTDEELVNYYLKRKINAQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSCQSRPIGMKKTLVYYKGRAPQGIRTDWVMHEYRLDDKECEDTTGLQDTYALCRVFKKNGICSDIEEQQGQCSISLIECSQTIINECETMSPDIPGASSSCLEEEDKDDSWMQFITDDAWYSSNAAMIGGEEVSHVTFTN 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00378 238 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Cca08g00378 238 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Cca08g00378 238 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 238 - -
Cca08g00378 238 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Cca08g00378 238 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Cca08g00378 238 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00378 Cca-Chr8 5745092 5748962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00378 1 227 NAC Transcription Factor Family AT3G17730 77.178 5.23e-134 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca08g00378 NAM 1.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00378 - - gmx:100784495 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00378 08 5745092 5748962 Cca08g00378 08 5745092 5748962 ECH