Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00376 ATGGCTAACAACGTTGTTGCTGTTGTTAAGGTACCTGCTATTTCTCTACCTTCATTACCCTTAACGAGTGATCCTCTCACTCTCATCCATAAGATTCAGAGCCAAAGACTCACACTTCATCTGAATTGCTCCCAAACCAAAAACACAACAACCTCATTCCCTTCTACCCTCTCAATCTCATCATCACCCCTCACAAACAAAACTAGTTGCTTTGTGTTGGCGTGTCTCCCTCCTGCTTCTTCTGAACCCTCCACCTCATCTTCCACTGCCAAACCCTCTTCTCTTTCTCATCCAACTAAGCTTTATGTTAGTGGGCTATCATTTCGTACCACGGAAGAGAGTTTGCGAAATGCGTTTAAGAATTTTGGTCAACTTGTGGAAGTCAAGCTGGTGATGGATAGAATCGCAAATAGACCAAGAGGGTTTGCTTTTCTTCGATATGCAACTGAAGAAGAATCTCAGAAGGCTATTGAGGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATCTTTGTGGAAGTTGCCAGACCGAGATAA 537 0.4358 MANNVVAVVKVPAISLPSLPLTSDPLTLIHKIQSQRLTLHLNCSQTKNTTTSFPSTLSISSSPLTNKTSCFVLACLPPASSEPSTSSSTAKPSSLSHPTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVARPR 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00376 178 Gene3D - 77 178 IPR012677 -
Cca08g00376 178 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 177 IPR000504 GO:0003723
Cca08g00376 178 SUPERFAMILY RNA-binding domain, RBD 91 178 IPR035979 GO:0003676
Cca08g00376 178 PANTHER RNA-BINDING PROTEIN 1 31 178 - -
Cca08g00376 178 PANTHER TRANSFORMER-2-RELATED 31 178 - -
Cca08g00376 178 SMART rrm1_1 100 173 IPR000504 GO:0003723
Cca08g00376 178 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 170 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00376 Cca-Chr8 5721469 5724219 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00376 99 178 Eukaryotic Initiation Factors Gene Family AT4G34110 27.500 2.20e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00376 - K13195 gmx:100305561 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00376 08 5721469 5724219 Cca08g00376 08 5721469 5724219 ECH