Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00375 ATGGAGATGCAGGACCAAATAGAAAGCATTAGATCAACCATATTTGGCTCAGCTAGTAACGGCCATTCCAGTGGTGGAAAGCAATCTGAAAATGATGCTCATATACCTTCTGTTGGAAACAGCCATACCCCCAAGGTGAGGAAACCATATACCATTACTAAACAAAGGGAGAAGTGGACAGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAATTGTATGGTCGTGGCTGGCGCCAAATTGAAGAGCATATAGGTACCAAAACTGCTGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTGAGGGAATCTGAGGTCAGTGCTGAGAGTTCTATACAGCCAATTAACATACCTCCTCCTCGGCCTAAGAGAAAACCTCTCCATCCATATCCTCGGAAATCAGTTAACTCTTTCAAAGGACACACCATATCAAATGAAACAGAAATATCTCCATCTACAAACCTGTTAGTTGCAGAGAAAGACACCCCGTCTCCAACCTCAGTGCTATCTACAGTTGGTTCAGAAGCATTTGGGTCTGCATTTTCGGAGCAGACTAACAGATGCCTTTCACCAAATTCTTGCACCACTGATATTCACTCAGTCAACTTGTCACCTGTCGAAAAGGAAAATGATTGCATGACATCCAAAGCATCCGAAGAGGAAGAGAAAGGATCGCCAGCTTCAGTTCCTTTATCCACTGTTTCTAACCCAAACACATGCATGAAGTCCGAGTTTAGTTCTAAGGACACTGAATGTTTCATAGAAGATGCTGCCAACATGCCACAAACCACTAGTATTAAGCTTTTTGGAAGAACAGTCTCTACGATAGGTAATCAGAAGTCAATGAACCTAAATGATGAGAATGGTAAGCCAATAACTGTAAAGTCTGATGAATTGGATGATGTGGAGAATGAAAAGCCTGACCAGTCAGGCGAATCCAAGCAAGTAGATACACAATTGTCGCTAGGCTTTAATGGTAACTGGCCTTTAACACCTGATGCTGATGGAGCTAATGTGACCAGCATAGAGCCCCCAAAGGAGAACCTATGTTTCAGTGAATGTGCACCTGATGCATCATCATCTTTGCCGTGTTGGACTTTGTACCAAGGCCTTCCAGCTTTCTACATGGAGCATTGCAATCAGATCCTAAATCCCATGTCTATTAGGCCCTCTTTGAAAGTAAGATCAAGGGAGGAGGAAAGTTGTTGCACTGGTTCCAACACTGAATTAGTTTGTGAGATGGAAAACCAAAGCAAGAACTCAGATGTTGTTGACTCTCAGTGTCAAAAATATAATGAGGAAGGAGCTGCACCCAAGAAGCCTTCAAGGGGGTTTGTACCATATAAAAGATGTTTAGCTGAAAGAGATGGAAATTCTTTACTTGTTGCCATGGAAGAGAGGGAGGGGCAACGAGCTCGTGTGTGCTCATAG 1443 0.429 MEMQDQIESIRSTIFGSASNGHSSGGKQSENDAHIPSVGNSHTPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESEVSAESSIQPINIPPPRPKRKPLHPYPRKSVNSFKGHTISNETEISPSTNLLVAEKDTPSPTSVLSTVGSEAFGSAFSEQTNRCLSPNSCTTDIHSVNLSPVEKENDCMTSKASEEEEKGSPASVPLSTVSNPNTCMKSEFSSKDTECFIEDAANMPQTTSIKLFGRTVSTIGNQKSMNLNDENGKPITVKSDELDDVENEKPDQSGESKQVDTQLSLGFNGNWPLTPDADGANVTSIEPPKENLCFSECAPDASSSLPCWTLYQGLPAFYMEHCNQILNPMSIRPSLKVRSREEESCCTGSNTELVCEMENQSKNSDVVDSQCQKYNEEGAAPKKPSRGFVPYKRCLAERDGNSLLVAMEEREGQRARVCS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00375 480 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 54 103 IPR006447 GO:0003677
Cca08g00375 480 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Cca08g00375 480 MobiDBLite consensus disorder prediction 1 48 - -
Cca08g00375 480 PANTHER PROTEIN REVEILLE 7-RELATED 3 467 - -
Cca08g00375 480 SUPERFAMILY Homeodomain-like 50 104 IPR009057 -
Cca08g00375 480 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Cca08g00375 480 MobiDBLite consensus disorder prediction 283 321 - -
Cca08g00375 480 MobiDBLite consensus disorder prediction 1 51 - -
Cca08g00375 480 PANTHER SWI/SNF COMPLEX-RELATED 3 467 - -
Cca08g00375 480 MobiDBLite consensus disorder prediction 295 316 - -
Cca08g00375 480 ProSiteProfiles SANT domain profile. 54 105 IPR017884 -
Cca08g00375 480 MobiDBLite consensus disorder prediction 112 142 - -
Cca08g00375 480 Gene3D - 58 105 - -
Cca08g00375 480 SMART sant 55 103 IPR001005 -
Cca08g00375 480 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Cca08g00375 480 MobiDBLite consensus disorder prediction 210 242 - -
Cca08g00375 480 CDD SANT 58 101 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00375 Cca-Chr8 5716635 5721203 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca08g00375 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00375 - - gmx:778089 808.52