Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00374 ATGGAGTATGGAAGTGGGTCTCCTGGTGATCACCATCATCACCATGATGGTTCTTCTGACTCCCAAAGAAGGAAGAAACGTTACCACCGTCACACAGCTAACCAGATTCAGAGGCTTGAATCGATGTTCAAGGAGTGTCCACATCCAGATGAGAAGCAGAGACTGCAATTGAGTAGGGAGTTAGGCTTGGCGCCTAGACAGATCAAATTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCTCAGCATGAGAGAGCGGATAATTGTGCACTCCGAGCAGAGAATGACAAGATTCGTTGTGAGAACATAGCCATAAGGGAGGCCTTGAAAAATGTTATCTGCCCCTCTTGTGGTGGTCCTCCTATCAATGAGGATTGTTACTTTGATGAGCAAAAGTTGAGATTGGAGAATGCTCAACTCAAAGAGGAGCTTGATAGAGTATCCAGCATTGCCGCTAAGTACATTGGAAGGCCAATTTCTCAACTCCCACCTGTGCAGCCTATTCATATATCTTCACTTGACTTGTCAATGGGGAATTTTGGGAGCCAAGGGTTCGGGGGCCCTTCTCTTGATCTTGATCTTCTTCCTGGGAGTTCTTCATCAGCTATGCCAAATGTGCCTCCTTACCAACCTGCTTGTCTTTCAGACATGGATAAGTCTCTCATGTCCGACATCGCCTCAAATGCCATGGAAGAAATGATCAGGCTATTGCAAACAAATGAGCCCTTGTGGATGAAAGCTGCTGATGGGAGGGATGTCCTTGATCTTGATAACTACGAAAGAATGTTTCCCAAGGCTAATAGTCACTTGAAGAACCCCAATGTTCATGTCGAAGCTTCTAGAGATTCTGGAGTTGTGATTATGAATAGCTTAACTTTGGTTGACATGTTTATGGATCCGAACAAGTGGATGGAGCTATTTCCTACTATTGTCACAATGGCAAGGACAATTGAAGTTATATCTTCTGGAATGATGGGTGGTCACAGTGGTTCTTTGCAATTGATGTATGAAGAGTTGCAAGTGCTTTCTCCACTTGTTTCTACTAGAGAGTTCTATTTCCTGCGTTACTGTCAGCAAATTGAGCAAGGCTTATGGGCAATAGTAGATGTTTCATATGATTTTCCTCAAGATAACCAATTTGCTCCTCAGTTTCGATCTCATCGACTTCCTTCCGGTGTCTTCATCCAAGACATGCCTAATGGATATTCCAAGGTTACTTGGATTGAGCATGTAGAGGTTGAAGATAAAACTCCAGTTCATAGGCTCTACAGGAATCTTATTTATAGTGGCATTGCATTTGGAGCACAAAGATGGCTAACTACACTTCAGAGGATGTGTGAGAGGATTGCTTGTCTAATGGTGACAGGCAATTCGACCCGCGATCTTGGAGGAGTGATTCCCTCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCACAAAGGATGGTCACCAATTTTTGCGCAAGCATTAGTGCATCATCTGGCCACAGATGGACCACACTCTCTGGAATGAACGAGATTGGAGTCAGAGTCACTGTGCACAAGAGCACAGACCCTGGCCAACCTAATGGTGTGGTGCTGAGTGCAGCCACCACCATTTGGCTCCCCATTCCTCCACAAACAGTGTTCAATTTCTTCAAGGATGAAAAGAAAAGACCTCAGTGGGATGTTCTTTCCAATGGTAATGCCATGCAAGAGGTTGCTCATATAGCAAATGGTCCACACCCTGGTAACTGCATATCTGTGCTTCGAGCTTTCAACACAAGTCAAAACAATATGCTGTTCCTCCAGGAGAGTTGTGTGGACTCCTCAGGATCTCTAGTGGTGTATTGTCCAGTTGATCTTCCAGCCATCAACATAGCAATGAGTGGTGAAGACCCTTCATACATCCCCCTCCTTCCCTCAGGCTTCACCATTTCCCCTGATGGGCAAGGTGAGCAAGATGGAGCAGGAGCCTCAACCAGCACAAGCACCAGCAGGGCCATGGGGGGCTCTGGGGGCTCACTCATCACTGTTGCATTCCAAATCCTGGTGAGTAGCCTGCCATCTGCCAAGCTCAATATGGAGTCAGTGGCGACGGTTAATAGCCTCATCGGCAACACTGTCCAACAAATAAAGTCTGCCTTGAATTGTCCTGGTTCCTGA 2145 0.4611 MEYGSGSPGDHHHHHDGSSDSQRRKKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENIAIREALKNVICPSCGGPPINEDCYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMGNFGSQGFGGPSLDLDLLPGSSSSAMPNVPPYQPACLSDMDKSLMSDIASNAMEEMIRLLQTNEPLWMKAADGRDVLDLDNYERMFPKANSHLKNPNVHVEASRDSGVVIMNSLTLVDMFMDPNKWMELFPTIVTMARTIEVISSGMMGGHSGSLQLMYEELQVLSPLVSTREFYFLRYCQQIEQGLWAIVDVSYDFPQDNQFAPQFRSHRLPSGVFIQDMPNGYSKVTWIEHVEVEDKTPVHRLYRNLIYSGIAFGAQRWLTTLQRMCERIACLMVTGNSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCASISASSGHRWTTLSGMNEIGVRVTVHKSTDPGQPNGVVLSAATTIWLPIPPQTVFNFFKDEKKRPQWDVLSNGNAMQEVAHIANGPHPGNCISVLRAFNTSQNNMLFLQESCVDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGQGEQDGAGASTSTSTSRAMGGSGGSLITVAFQILVSSLPSAKLNMESVATVNSLIGNTVQQIKSALNCPGS 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00374 714 SUPERFAMILY Homeodomain-like 5 82 IPR009057 -
Cca08g00374 714 ProSiteProfiles START domain profile. 215 451 IPR002913 GO:0008289
Cca08g00374 714 CDD homeodomain 24 83 IPR001356 GO:0003677
Cca08g00374 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 712 IPR042160 -
Cca08g00374 714 Coils Coil 130 150 - -
Cca08g00374 714 Gene3D - 223 448 IPR023393 -
Cca08g00374 714 SMART HOX_1 23 86 IPR001356 GO:0003677
Cca08g00374 714 MobiDBLite consensus disorder prediction 1 23 - -
Cca08g00374 714 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Cca08g00374 714 MobiDBLite consensus disorder prediction 640 661 - -
Cca08g00374 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 16 712 - -
Cca08g00374 714 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Cca08g00374 714 SMART START_1 224 448 IPR002913 GO:0008289
Cca08g00374 714 SUPERFAMILY Bet v1-like 469 706 - -
Cca08g00374 714 CDD START_ArGLABRA2_like 219 447 - -
Cca08g00374 714 MobiDBLite consensus disorder prediction 1 32 - -
Cca08g00374 714 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Cca08g00374 714 MobiDBLite consensus disorder prediction 647 661 - -
Cca08g00374 714 Pfam START domain 225 448 IPR002913 GO:0008289
Cca08g00374 714 SUPERFAMILY Bet v1-like 216 449 - -
Cca08g00374 714 Gene3D - 10 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00374 Cca-Chr8 5661211 5665817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00374 20 712 Homeobox Transcription Factor Family AT1G73360 67.622 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca08g00374 START 4.3e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00374 K09338 - gmx:100809075 1321.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00374 08 5661211 5665817 Cca08g00374 08 5661211 5665817 ECH