Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00367 ATGGCTAATTTTGAAAAAGATGGGGAGCCCGTGCTGTCAGAAACACATGCACAACATAATGATGAACTTAAGAATTCTAGCTTTCAAAAGGTTGTAACACGAACAAGAAGTGCATCGATTTCAATTCCTATGGTCTCCATGGAGCAATATGAGAGAGAAACTAGTCTTGTGAGGCATACGAGTCCACTTCTTAGTATGAGAAAATCCCCCTTAAGGCATATGAGTGGTCCACTATATGCTACCAATGGAACTGAAAATCTTCTGCATCAGAGTATAACTGTGAAAGGAAACAAAGCAGTAGAGAGCAAGACAGAAAAATTTTCTAGTGTTGAAATGACAGATGAAAGTCATTGGAATAACAACAATGATAGAAAGAATGAACACTTGCTAAGGTCTGGGCTATTGGGAATGTGTAATGATCCTTATTGTACAACTTGCCCTACTTACTTCAAGACCTCTATGCAAAGACTTCCAAAACCTTCCACTATATTTGATCCCCAGTTTCACTTCCACAGTTCTCTTTATGGGGATGCCAAGGGTTTGGGGAGAAAACTTGTTTCTTTCTGCTCTTCATATGTTCCTGGAGTTATAAATCCTCACACAAGAATTGTACAACAATGGAACAAGTTTTTGGCCATTTTTTGCATGGTGGCCATTTTTGTGGATCCATTATTTTTGTTCTTAATCTATGTGCAGAAGGATGATAAATGTATTGCTATCAACTGGAACATGACAAAAACACTTGTTTTACTAAGAAGCATAAATGATTTTGTATATTTATTGAACATTCTTCTCCAGTTTAGGTTGGCATATGTTTCTCCAGAGTCAAGGGTGGTTGGTGCTGGAGACTTAGTTGATCATCCCAAGAAAATAGCTCTCTATTATCTGCAGGGTTATTTTCTTCTTGACCTCTTTGTTGTATTTCCTCTTCCTCAGATAATGATATTGTTGATCCTACCAAGACACTTGGGGTTATCAGGAGCAAACTATGCTAAGAATCTTCTGCGTGCAGCGATCCTTGTGCAGTATATTCCCAAACTATTCAGGATTTTGCCACTGCTAATTGGACAATCACCAACAGGATTTATATTTGAGTCAGCTTGGGCGAATTTCATTATAAATCTTCTCATTTACATGCTCGCTAGCCATATTGTTGGCTCTTGCTGGTACCTCCTTGGTCTACAGAGGGTTAATCAATGTTTGCGAGATGCCTGCGGTAATTCTCATATTGATAGATGCATGAGAGTCATTGATTGTGGACATGGTCATACTAGAAACAACCAATCTGACCGGATATCAGCTCTGTGGAGCAACAATTCAAATGCCATTGCATGTTTGAATCCCTCCCCCAGAGGTTTCAATTATGGGATCTATGTCAATGCTGTACCTCTTACAATGCAAACTAGTGTGGTTAAGAAATATGTTTATTCTCTATTTTGGGGATTTCAGCAAATCAGTACTCTCGCTGGTAGTTTAACCCCAAGTTATTTTTGGGGGGAAGTCCTTTTTACAACGGCCATCATCGGATTGGGACTCTTGCTTTTTGCAGTTCTCATTGGAAACATACAGAACTTTCTTCAAGGTCTTGGACGGAGAAGGCTAGAAAAGCAACTTAGAGGTCGTGATGTTGAGCAATGGATGAGCCATCGTCGCTTACCAGAAGATCTAAGAAGAAAAGTACGACAGGCTGAACGGTATAATTGGGCTGCAACAAAGGGAGTGAATGAAGAAATGCTTCTTGAGAATTTGCCAGAAGATCTGCAGAGAGACATAAGACGTCATCTCTTCAAATTTGTTAAGAAAGTCCGAATTTTCACCCTGATGGATGAGCCTATCTTAGATGCCATTTGTGAGAGATTGAGACAGAAGACATACATCAAAGGAAGTATAATTTTGAGTCAAGGTGGCCTAGTAGAAAAGATGATCTTTATTGTGCGTGGAAAATTGGAGAGCATTGGAGAAGATGGAATCAGAATTCCCTTGTCTGAAGGCGATGCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAGCATTCTTCTGTAAGCACAGATGGTAAAAAAGTAAGGCTTCTGGGACAAAGGTTGCTTAGCAACAGAACAGTAAAGTGCTCAACAAATGTGGAGGCTTTTTCACTCCGAGGTGAAGATCTTGAAGAAGTCACAACCCGATTCATGAGATTCTTGCGGAATCTTCGAGTTCAAGGATCCCTAAGGTATGAATCACCTTACTGGAGATCATTAGCAGCAATTCGAATTCAGGTTGCATGGAGATACAGGAAGAAACGTACAAATCCAGCTATGCCTCACAATTAG 2313 0.3995 MANFEKDGEPVLSETHAQHNDELKNSSFQKVVTRTRSASISIPMVSMEQYERETSLVRHTSPLLSMRKSPLRHMSGPLYATNGTENLLHQSITVKGNKAVESKTEKFSSVEMTDESHWNNNNDRKNEHLLRSGLLGMCNDPYCTTCPTYFKTSMQRLPKPSTIFDPQFHFHSSLYGDAKGLGRKLVSFCSSYVPGVINPHTRIVQQWNKFLAIFCMVAIFVDPLFLFLIYVQKDDKCIAINWNMTKTLVLLRSINDFVYLLNILLQFRLAYVSPESRVVGAGDLVDHPKKIALYYLQGYFLLDLFVVFPLPQIMILLILPRHLGLSGANYAKNLLRAAILVQYIPKLFRILPLLIGQSPTGFIFESAWANFIINLLIYMLASHIVGSCWYLLGLQRVNQCLRDACGNSHIDRCMRVIDCGHGHTRNNQSDRISALWSNNSNAIACLNPSPRGFNYGIYVNAVPLTMQTSVVKKYVYSLFWGFQQISTLAGSLTPSYFWGEVLFTTAIIGLGLLLFAVLIGNIQNFLQGLGRRRLEKQLRGRDVEQWMSHRRLPEDLRRKVRQAERYNWAATKGVNEEMLLENLPEDLQRDIRRHLFKFVKKVRIFTLMDEPILDAICERLRQKTYIKGSIILSQGGLVEKMIFIVRGKLESIGEDGIRIPLSEGDACGEELLTWYLEHSSVSTDGKKVRLLGQRLLSNRTVKCSTNVEAFSLRGEDLEEVTTRFMRFLRNLRVQGSLRYESPYWRSLAAIRIQVAWRYRKKRTNPAMPHN 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00367 770 Gene3D Jelly Rolls 602 726 IPR014710 -
Cca08g00367 770 SUPERFAMILY cAMP-binding domain-like 534 731 IPR018490 -
Cca08g00367 770 MobiDBLite consensus disorder prediction 1 23 - -
Cca08g00367 770 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 764 - -
Cca08g00367 770 CDD CAP_ED 604 731 IPR000595 -
Cca08g00367 770 Gene3D Helix hairpin bin 532 596 - -
Cca08g00367 770 SMART cnmp_10 604 736 IPR000595 -
Cca08g00367 770 Gene3D - 206 528 - -
Cca08g00367 770 PANTHER CYCLIC NUCLEOTIDE-GATED CATION CHANNEL PROTEIN 4 764 - -
Cca08g00367 770 MobiDBLite consensus disorder prediction 1 27 - -
Cca08g00367 770 ProSiteProfiles cAMP/cGMP binding motif profile. 604 672 IPR000595 -
Cca08g00367 770 SUPERFAMILY Voltage-gated potassium channels 199 533 - -
Cca08g00367 770 Pfam Ion transport protein 209 531 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00367 Cca-Chr8 5570455 5581571 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00367 5 682 Ion Channels AT3G17700 59.708 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00367 K05391 - ccaj:109789004 1540.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00367 08 5570455 5581571 Cca08g00367 08 5570455 5581571 ECH