Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00366 ATGGCTCATTTTGAAAAAGATGAGGAGCCAATGCTGTCAGAAACACGAGCTCAACTATCTGATGAAGTCGTGGGTTCTAATTTCCGGAGGCTTGTATCTAGGACACGAAGTGCTTCAATATCTATTCCTATGGCCACCTTAGAATCATATGAGAAAGAAACTAGTCTTGTGGGACATACTGGTCCACTTCGAAATGTTAGAAAAACTCCCTTTGTGCAGATGAGTGGTCCACTGTATGCTGCCCATGGAACTGGAAATCTTCCGCGACAGAGTATAGTTGCCGCAGGAAACAAAGCAGTGGAGAGCAAGACAGAAAATTTTTCTAATTTTGATGGCACAAACGAAAACCGTTGGGATAATGACTATGATAGAAAGAATGAGCACTTAATGAGGTCTGGGCAACTGGGAATGTGTAATGATCCTTATTGCACTACTTGTCCTACTTATTTCAAGGCTTCTTCTCAGACAAATACTCGAAAAACTTCAACTTTATTTGATCACAAGTTCCATAATAATCTTTATGGGGATGCCAAGGGCTTTGGAAGAAAACTTTTTTCCTTTTGTTCTTCATATGTTCCTGGAGTTATGAATCCCCACGCAAAAGTTGTACAACGATGGAATAAGATTTTGGCCATTTTTTGCTTGGTGGCAATTTTTGTGGATCCATTATTTTTCTTCTTAATATATGTGAAGAAGGATGGTAAATGTATTGCTATCAATTGGACAATGACAACGACACTTGTTTCACTTAGAAGCATTAATGATTTGATATATTTCTTTAACATTCTTCTCCAGTTTAGGTTGGCCTATGTTTCTCTAGAGTCAATGGTGGTGGGTGCTGGAGATTTAGTTGACCATCCAAAGAAAATTGCCATTAATTATCTGAAGGGTTATTTTTTTATGGACTTATTTGTTGTATTTCCTCTTCCCCAGATAATGATATTATTTGTCCTACCAAAGTCTCTGGGATCATCAGGAGCAAATTATGCTAAAAATCTTCTGCGTGCAGCTATCCTTGTGCAGTATTTCCCCAGATTATTCAGGTTTCTGCCTCTGCTAATTGGCCAGTCTCCAACAGGATTCATATTTGAGTCAGCCTGGGCAAATTTCATTATTAATCTTCTCATTTTTATGCTATCTGGCCATGTTGTTGGTTCTTGCTGGTACCTCTTTGGTTTACAGAGGGTTAATCAATGCTTGCGAAATGCCTGCCGTGATTCTAATATTACTGGATGCTCAACATTCATTGATTGTGGCGGTGCATCTGGCCATAAGTTAGATCAGTGGAACAGTTATGCAAATGCCACTGCTTGTCTGGATTCCAGTTCCGGTGTTTTTCAATATGGGATCTATAACAAAGCTGTAGCACTTACTATGGAAACTAGGGTGGTCAACAAATATGTATATGCACTGTTTTGGGGCTTCCAGCAAATCAGTACTCTGGCTGGTAATCAAACCCCAAGCTATTTTGTTTGGGAAGTACTTTTCACAATGGCCATCATAGGATTGGGACTCTTGCTTTTTGCACTTCTCATTGGAAACATACAGAACTTTCTTCAGGCCCTTGGACGCAGGAGGCTAGAGATGCAACTTAGAGGTCGTGATGTTGAGCAATGGATGAGCCATCGTCGCTTACCTGAAGAACTAAGAAGGAGAGTAAGACAGGCTGAACGGTATAATTGGGCAGCAACAAGGGGGGTGAATGAAGAAATGCTTCTGGAGAATTTGCCAGAAGATCTCCAGACAGAAATAAGACGTCATCTCTTCAAATTTGTTACGAAAGTTCGAATCTTTGCCCTGATGGATGAGCCTATCTTAGATGCCATTTGTGAGAGACTAAAACAGAAGACATACATCAAAGGAAGTAAAATTTTGAGTCACGGTGGCCTTATAGAGAAGATGGTCTTCGTTGTGCGTGGGGAGTTGGAGAGCGTTGGAGAAGATGGAACTATAGTTCCCTTATCTGAAGGCAATGCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAGCATTCTTCTGTAAGCACAGATGGTAAAAAAGTAAGGATTCAAGGGCAGAGGTTGCTGAGCAACAGGAGTGTAAGATGCATAACAAACGTGGAAGCATTTTCACTCCGCGCTGCAGACCTCGAGGAACTCACAATTCTTTTCACAAGATTCTTGCGGAACCCTCACGTTCAAGGAATACTAAGGTACGAATCACCTTATTGGAGATCCCTTGCAGCAAGCCGCATCCAGGTTGCATGGAGATACAGGAAGAAGCGTCTAAGTCGAGCTTATACCTCGCAATCGGACCAAACATGGACGTCCTAG 2313 0.4133 MAHFEKDEEPMLSETRAQLSDEVVGSNFRRLVSRTRSASISIPMATLESYEKETSLVGHTGPLRNVRKTPFVQMSGPLYAAHGTGNLPRQSIVAAGNKAVESKTENFSNFDGTNENRWDNDYDRKNEHLMRSGQLGMCNDPYCTTCPTYFKASSQTNTRKTSTLFDHKFHNNLYGDAKGFGRKLFSFCSSYVPGVMNPHAKVVQRWNKILAIFCLVAIFVDPLFFFLIYVKKDGKCIAINWTMTTTLVSLRSINDLIYFFNILLQFRLAYVSLESMVVGAGDLVDHPKKIAINYLKGYFFMDLFVVFPLPQIMILFVLPKSLGSSGANYAKNLLRAAILVQYFPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHVVGSCWYLFGLQRVNQCLRNACRDSNITGCSTFIDCGGASGHKLDQWNSYANATACLDSSSGVFQYGIYNKAVALTMETRVVNKYVYALFWGFQQISTLAGNQTPSYFVWEVLFTMAIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEELRRRVRQAERYNWAATRGVNEEMLLENLPEDLQTEIRRHLFKFVTKVRIFALMDEPILDAICERLKQKTYIKGSKILSHGGLIEKMVFVVRGELESVGEDGTIVPLSEGNACGEELLTWYLEHSSVSTDGKKVRIQGQRLLSNRSVRCITNVEAFSLRAADLEELTILFTRFLRNPHVQGILRYESPYWRSLAASRIQVAWRYRKKRLSRAYTSQSDQTWTS 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00366 770 Gene3D - 207 522 - -
Cca08g00366 770 ProSiteProfiles cAMP/cGMP binding motif profile. 597 665 IPR000595 -
Cca08g00366 770 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 4 762 - -
Cca08g00366 770 Gene3D Jelly Rolls 595 719 IPR014710 -
Cca08g00366 770 Gene3D Helix hairpin bin 524 589 - -
Cca08g00366 770 SUPERFAMILY Voltage-gated potassium channels 201 525 - -
Cca08g00366 770 CDD CAP_ED 597 713 IPR000595 -
Cca08g00366 770 Pfam Ion transport protein 208 525 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca08g00366 770 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 762 - -
Cca08g00366 770 SUPERFAMILY cAMP-binding domain-like 525 717 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00366 Cca-Chr8 5554985 5567265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00366 2 675 Ion Channels AT3G17700 61.324 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00366 K05391 - ccaj:109789004 1524.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00366 08 5554985 5567265 Cca08g00366 08 5554985 5567265 ECH