Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00365 ATGGTTTTGACTTTCCGCTCAGAAAGCTTTCAAGCTGTTTTGATAAGACGAATTGGTCACCAGGAAAAGAAATTGAAGACACAAACTGCATCAGTTTCTATTCCCATGGAGTCATATGAAAGAGAAATTAGTCTGGTGGGACACAGTGGTTCACTATATGCTACACCAGGAACTGAAAATCTTTCGCAGCAGAGTATAGTTATCGCAGGAAACAAATCAGAGGAGAGCGAAACAGATAAATTTGCTACTTTCAGCACCACGGGTTCAAATCACTGGAATAACAACTATGACAAAAAAAATGAACATTTGCTAAGATCTGGGCAACTGGGAATTTGTAATGATCCTTATTGTGCTACTTGTCCTACTTACTTCAAGGCTTCTCAACCAAGTAATCCAAAAGCTTCAACTATATCTGATCCCAAGTTTCACAATGCTCTTGATAGAGACGCCAAGAGTTTCGCTAGAAAACTTTTTTCTTCCTGTTCTTTTGTTCCTGGAGTTATGAACCCTCACTCTAAATTCATACAACATTGGAACATGGTTCTGGCCATTTGTTGCTTGGTTGCAATTTTTGTGGATCCATTATTTTTCTTCTTACTCTATGATTATAATTGTATAGTTATCAACTGGAGATTGACAAAAGCACTAGTTATAGTTAGAAGCATGAATGACTTCATATATTTGCTTAACATTCTTCTCCAGTTTAGGTTGGCTTTTGTTTCTCCCGAGTCGAGGGTGGTAGGTGCTGGAGATTTAGTTGACCATCCAAAGAAAATTGCTCTTCATTACCTGAAGGGTTATTTTCTTATTGACTTATTTGTTGTATTTCCTCTTCCTCAGATCATGTTGTTGTCTGTCCTACCAAAATCTTTGAGGGGAGCAAATTATGCTAAGAATGCTCTGCGTGCAGCAATCCTAGTGCAGTATATTCCCAGATTATTCAGGTTTCTGCCAATGCTGTTTGGCCAGTCTCCAGCAGGATTCATATTCGAGTCAGCCTGGGCAAATTTCGTTATAAACCTTCTCATTTTTATGTTAGCTAGCCATGTTGTTGGATCTTGCTGGTACCTCTTTGCTCTGCAGAGGGTTAATCAATGTTTTCGAAATGCATGCCACAGTTCTAATATACCTGGATGCCTGACATTCATCGATTGTGGACAAGGTCATAATAGACACAATCAGCTTGGCCTATCATCAAACCAGTGGAACAACAATACAGATGCTATTGCTTGTTGGAATTCCCCTTCCCAAGGTTCTTTTGTTTATGGGATTTATGCCAATGCTGTACCTCTTACTACACAAACAGACATAGTCACCAAATATGTATATGCTCTATTTTGGGGATTACTGCAAATTAGTACTCTGGCTGGTAACCAAACACCTAGCAATTTTGTGTGGGAAGTCCTTTTTACTATGGCCATCATTGGATTGGGACTATTGCTTTTCGCACTTCTCATTGGAAACATACAAAACTTTCTTCAAGGTCTTGGACGGAGGAGGCTAGAAATGCAGCTTAGACGCCGAGATGTTGAGCAATGGATGAGTCATCGACACTTACCAGAATACCTACGAAAGAAAGTGCGAGAGGCTGAACGGTATAGTTGGACTGCAACAAGAGGGGTGAATGAAGCAATTCTAATGGAGAATTTTCCAGAAGATCTCCAAGTGGACATAAGGCGCCATCTCTTCAAGTTTGTTAAAAAAGTTCGAATTTTCGCTCTGATGGATGAGCCGATCTTAGATGCTGTTTGTGAGAGGCTAAGACAAACGACATACATCAAAGGAAGTAGAATTTTGAGTCATGGTGCTGTGGTAGAGAAGATGGTATTCGTGGTGCGTGGTAAATTGGAGAGCATCGGAGAAGATGGAACTAGAATTCCTTTATCTGAAGGGGATGCTTGTGGTGAAGAACTCCTCACATGGTATCTTGAGCATTCTTCTGTCAGCACAGATGGCAGAAGAGTGAGGCTTCCAGGTCAGAGGTTGCTTAGCAACAGGACAGTAAGATGCTCAACAAATGTGGAAGCACTGTCACTCCGAGCTGCAGACCTTGAAGAAGTCACAATCCTTTTCACCAGATTCTTGCGTAGTTCGCGTGTTCAAGGAGCCTTAAGGTATGAATCACCATATTGGAGATCCCATGCAGCAATCCGTATTCAGTTGGTCGAGTTTTGTCGGCGAATTCATTTCCTCTTCAACCACCTCGTGCTCTTTCTAGTCCACTTGCAATTCCTACAAATTCAAGTTGCAGTTGCTACTTTGCGGTATCAGTTTGTATTAGATTCCCACGAAGAAAACATGGCACAGCTAGAAAAAGATGAGGTTAAAATGATGGCAGAAATATCTGATGTAGTCGAGGATTCTGAATTACGGAGGCGTGTGTCTAGGACACCAAATGCATCAATTTCTATTCCTATAGCCTCCTTGAAATCATATGAAGGAACAGCAAGTCCAACTGCGATAGGAAACATAGCAGAGAGCACAAACATATTTCATACTTTGGATGGTGCACATGAAAATGATTGGAATAACGACTTTGATATAAAGCATAAATACTTAAGTAGGTCTGAGAAACTAGTAATGTGCAACGATCCTTATTGTTCTACTTGCCCTACTTATATCAAGGCTTCTCGAAAACCTTCAACTAAAGTTCATCCCAAGTTCAACAATAATCATTGTGGGGATGACAAGGGTTTTGGACGAAAACTAATTTATTTCGTCTCTTCATATGTTCCTGGAGTTATGAATCCTCATGCTAAAGTTGTACAACAATGGAACAAGATTTTGGCCCTCTTTTGCTTGGTGGCAATTTTCGTTGATCCATTATTTCTTTTCTTAATCTATGTGAAGAAGGATGACAAATGTATTGCAATAAACCGGACAATGCGAACTCCACTTGTTTTAGTTAGAAGTATTAATGATTTGATATATTTGTCAAACATTCTTCTCCAGTTTAGGTTGGCTTATGTTTTTCCTGGGTCAAGGGTATTGGGTGCTGATGATTTAGTTGACCATCCCAAGAAAATTGCTCTTAATTATCTGAAGAGTTATTTTCTTGTTGACTTATTTATTGTACTTCCTCTTCCTCAGATAATCATATTATTTGTCCTACCAAAGTTTATGGGATCATCAGGAGCAAATTATGCTACATATCTTGTGCGTGCAATGATATTTTTGCAACAATTTCCCAGATTATTCAGGTTTTTACAAATTGTACGGTCTACAACGGCATTCATACTTGAGCAAGCATTAGCGAAAGACATTAAAAATCTACTCATTTTTATGCTCTGTGGCCATTTTGTTGGTTCTTGCTGGTACCGCTTTGGTCTACAGAGGGTTAATCAATGCTTGCGAGATGCCTGCTATAATTCTGATATTAATGACTGCTCAGTATTAATTGATTGTGGCCATGCATTTGGTGAGAAGTTAGATATGTGGAAAAATAATACAAATGCTGCTGCTTGTTTGGATGCCAGTTCTGGTGCCTTTTCATATGGAATTTATGAAGTGGCTGTACCCCTAACTGTAGAAGTTGGGGTGATCAGAAAATATGTATTTGCACTGTTTTGGGGCTACCAGCAAGTCATCACTTTGGCTGATAACCTATCCCCAAGCTATTTTGTGTGGGAAGTCCTATTTGCAATGGCCATCATGGTTTTGGGACTATGCTTTTTTGCTCTTTTCATCGGAAACATACAGAGCTATCTTCACACTCTTAGACACAGGAGGCTAGAAATGGAACTTAGAGGTCGTGATGTTGAGCAATGGTTGAGCCATCGCCGCATACCAGAAGATCTAAGAAGGAGAGTACGAATGGCTGAAAGGTATAATTGGGCAGCAACAAGGGGTGTGAATGAAGAAATGCTTATGGAGAATTTGCCAGAAGATCTCCAGACAGACATAAGACGTCATCTCTTCAAATTTGTGAAGAAAGTTCGAGTGTTTTCCTTGATGGATGAACCTATCTTAGATGCTATTTGTGATAGACTAAAACCAAAGGCGTACATGAAAGGAAGTAGAATTTTGACTCAAGGTGGGTTTGTAGAGAAGATGGTCTTTGTTGTGCGTGGAAAATTAGAGAGCTTTGGAGCAGATGGAACTAGAGTTACCTTATCTGACGGCGATGTTTGTGGTGAAGAACTTCTGACATGGTATATTGAACGTGTTTCTATAAGCACAGATGGTAAAAAAGTAAGGCTTCCAAGACAAAGATTGGTTAGCAATCGGACAGTAAAGTGCTTAACAAATGTGGAGGTTTTTTCTCTGCGTCTTGCAGACCTTGAGGATCTCACAATTCTTTTCGCAGGATCCATGCATAACCCTCGTGTTCAAGGAGCAATGAGGTATGGATCACTTTATTGGAGACCCCTTGTAGCAAAACGAATTCAAGTTGCATGGAGAAACAGGAAGAAGCGTCGTACCTCAGAATCAAATTAA 4437 0.3996 MVLTFRSESFQAVLIRRIGHQEKKLKTQTASVSIPMESYEREISLVGHSGSLYATPGTENLSQQSIVIAGNKSEESETDKFATFSTTGSNHWNNNYDKKNEHLLRSGQLGICNDPYCATCPTYFKASQPSNPKASTISDPKFHNALDRDAKSFARKLFSSCSFVPGVMNPHSKFIQHWNMVLAICCLVAIFVDPLFFFLLYDYNCIVINWRLTKALVIVRSMNDFIYLLNILLQFRLAFVSPESRVVGAGDLVDHPKKIALHYLKGYFLIDLFVVFPLPQIMLLSVLPKSLRGANYAKNALRAAILVQYIPRLFRFLPMLFGQSPAGFIFESAWANFVINLLIFMLASHVVGSCWYLFALQRVNQCFRNACHSSNIPGCLTFIDCGQGHNRHNQLGLSSNQWNNNTDAIACWNSPSQGSFVYGIYANAVPLTTQTDIVTKYVYALFWGLLQISTLAGNQTPSNFVWEVLFTMAIIGLGLLLFALLIGNIQNFLQGLGRRRLEMQLRRRDVEQWMSHRHLPEYLRKKVREAERYSWTATRGVNEAILMENFPEDLQVDIRRHLFKFVKKVRIFALMDEPILDAVCERLRQTTYIKGSRILSHGAVVEKMVFVVRGKLESIGEDGTRIPLSEGDACGEELLTWYLEHSSVSTDGRRVRLPGQRLLSNRTVRCSTNVEALSLRAADLEEVTILFTRFLRSSRVQGALRYESPYWRSHAAIRIQLVEFCRRIHFLFNHLVLFLVHLQFLQIQVAVATLRYQFVLDSHEENMAQLEKDEVKMMAEISDVVEDSELRRRVSRTPNASISIPIASLKSYEGTASPTAIGNIAESTNIFHTLDGAHENDWNNDFDIKHKYLSRSEKLVMCNDPYCSTCPTYIKASRKPSTKVHPKFNNNHCGDDKGFGRKLIYFVSSYVPGVMNPHAKVVQQWNKILALFCLVAIFVDPLFLFLIYVKKDDKCIAINRTMRTPLVLVRSINDLIYLSNILLQFRLAYVFPGSRVLGADDLVDHPKKIALNYLKSYFLVDLFIVLPLPQIIILFVLPKFMGSSGANYATYLVRAMIFLQQFPRLFRFLQIVRSTTAFILEQALAKDIKNLLIFMLCGHFVGSCWYRFGLQRVNQCLRDACYNSDINDCSVLIDCGHAFGEKLDMWKNNTNAAACLDASSGAFSYGIYEVAVPLTVEVGVIRKYVFALFWGYQQVITLADNLSPSYFVWEVLFAMAIMVLGLCFFALFIGNIQSYLHTLRHRRLEMELRGRDVEQWLSHRRIPEDLRRRVRMAERYNWAATRGVNEEMLMENLPEDLQTDIRRHLFKFVKKVRVFSLMDEPILDAICDRLKPKAYMKGSRILTQGGFVEKMVFVVRGKLESFGADGTRVTLSDGDVCGEELLTWYIERVSISTDGKKVRLPRQRLVSNRTVKCLTNVEVFSLRLADLEDLTILFAGSMHNPRVQGAMRYGSLYWRPLVAKRIQVAWRNRKKRRTSESN 1478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00365 1478 SUPERFAMILY Voltage-gated potassium channels 170 494 - -
Cca08g00365 1478 SMART cnmp_10 1314 1449 IPR000595 -
Cca08g00365 1478 SMART cnmp_10 571 703 IPR000595 -
Cca08g00365 1478 CDD CAP_ED 571 687 IPR000595 -
Cca08g00365 1478 Pfam Ion transport protein 177 498 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca08g00365 1478 Pfam Ion transport protein 927 1242 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca08g00365 1478 Gene3D - 926 1238 - -
Cca08g00365 1478 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 19 722 - -
Cca08g00365 1478 Coils Coil 760 780 - -
Cca08g00365 1478 Gene3D Helix hairpin bin 498 562 - -
Cca08g00365 1478 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 826 1473 - -
Cca08g00365 1478 CDD CAP_ED 1314 1430 IPR000595 -
Cca08g00365 1478 Gene3D - 176 495 - -
Cca08g00365 1478 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 826 1473 - -
Cca08g00365 1478 ProSiteProfiles cAMP/cGMP binding motif profile. 571 639 IPR000595 -
Cca08g00365 1478 SUPERFAMILY cAMP-binding domain-like 499 688 IPR018490 -
Cca08g00365 1478 SUPERFAMILY cAMP-binding domain-like 1244 1430 IPR018490 -
Cca08g00365 1478 Gene3D Helix hairpin bin 1240 1306 - -
Cca08g00365 1478 SUPERFAMILY Voltage-gated potassium channels 920 1236 - -
Cca08g00365 1478 Gene3D Jelly Rolls 569 693 IPR014710 -
Cca08g00365 1478 Gene3D Jelly Rolls 1312 1434 IPR014710 -
Cca08g00365 1478 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 19 722 - -
Cca08g00365 1478 ProSiteProfiles cAMP/cGMP binding motif profile. 1314 1390 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00365 Cca-Chr8 5516306 5550142 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00365 26 649 Ion Channels AT3G17700 57.055 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00365 K05391 - gsj:114390051 2147.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00365 08 5516306 5550142 Cca08g00365 08 5516306 5550142 ECH